1QIB

CRYSTAL STRUCTURE OF GELATINASE A CATALYTIC DOMAIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

X-ray structure of gelatinase A catalytic domain complexed with a hydroxamate inhibitor

Dhanaraj, V.Williams, M.G.Ye, Q.-Z.Molina, F.Johnson, L.L.Ortwine, D.F.Pavlovsky, A.Rubin, J.R.Skeean, R.W.White, A.D.Humblet, C.Hupe, D.J.Blundell, T.L.

(1999) Croatica Chemica Acta 72: 575-591


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
72 kDa type IV collagenase
A
161Homo sapiensGene Names: MMP2 (CLG4A)
EC: 3.4.24.24
Find proteins for P08253 (Homo sapiens)
Go to Gene View: MMP2
Go to UniProtKB:  P08253
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.204 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 84.830α = 90.00
b = 84.830β = 90.00
c = 57.900γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
X-PLORrefinement
DENZOdata reduction
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-11-19
    Type: Initial release
  • Version 1.1: 2008-04-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-05-31
    Type: Database references, Structure summary