1Q2N

REFINED Solution NMR structure of the Z domain of STAPHYLOCOCCAL PROTEIN A


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data.

Zheng, D.Aramini, J.M.Montelione, G.T.

(2004) Protein Sci. 13: 549-554

  • DOI: 10.1110/ps.03351704

  • PubMed Abstract: 
  • Staphylococcal protein A (SpA) is a virulence factor from Staphylococcus aureus that is able to bind to immunoglobulins. The 3D structures of its immunoglobulin (Ig) binding domains have been extensively studied by NMR and X-ray crystallography, and ...

    Staphylococcal protein A (SpA) is a virulence factor from Staphylococcus aureus that is able to bind to immunoglobulins. The 3D structures of its immunoglobulin (Ig) binding domains have been extensively studied by NMR and X-ray crystallography, and are often used as model structures in developing de novo or ab initio strategies for predicting protein structure. These small three-helix-bundle structures, reported in free proteins or Ig-bound complexes, have been determined previously using medium- to high-resolution data. Although the location and relative orientation of the three helices in most of these published 3D domain structures are consistent, there are significant differences among the reported structures regarding the tilt angle of the first helix (helix 1). We have applied residual dipolar coupling data, together with nuclear Overhauser enhancement and scalar coupling data, in refining the NMR solution structure of an engineered IgG-binding domain (Z domain) of SpA. Our results demonstrate that the three helices are almost perfectly antiparallel in orientation, with the first helix tilting slightly away from the other two helices. We propose that this high-accuracy structure of the Z domain of SpA is a more suitable target for theoretical predictions of the free domain structure than previously published lower-accuracy structures of protein A domains.


    Related Citations: 
    • The Mechanism of Binding Staphylococcal Protein a to Immunoglobin G Does not Involve Helix Unwinding
      Jendeberg, L.,Tashiro, M.,Tejero, R.,Lyons, B.A.,Uhlen, M.,Montelione, G.T.,Nilsson, B.
      (1996) Biochemistry 35: 22
    • An Improved Strategy for Determining Resonance Assignments for Isotopically Enriched Proteins and its Application to an Engineered Domain of Staphylococcal Protein A
      Lyons, B.A.,Tashiro, M.,Cedergren, L.,Nilsson, B.,Montelione, G.T.
      (1993) Biochemistry 32: 7839
    • Structures of Bacterial Immunoglobulin-Binding Domains and Their Complexes with Immunoglobulin
      Tashiro, M.,Montelione, G.T.
      (1995) Curr.Opin.Struct.Biol. 5: 471
    • High Resolution Solution NMR Structure of the Z Domain of Staphylococcal Protein A
      Tashiro, M.,Tejero, R.,Zimmerman, D.E.,Celda, B.,Nilsson, B.,Montelione, G.T.
      (1997) J.Mol.Biol. 272: 573


    Organizational Affiliation

    CABM-Rutgers University, 679 Hoes Lane, Piscataway, NJ 08854, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
IMMUNOGLOBULIN G BINDING PROTEIN A
A
58Staphylococcus aureusMutation(s): 2 
Gene Names: spa
Find proteins for P38507 (Staphylococcus aureus)
Go to UniProtKB:  P38507
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 
  • Olderado: 1Q2N Olderado

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-08-12
    Type: Initial release
  • Version 1.1: 2008-04-29
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance