Structural Constraints on protein self-processing in L-aspartate-alpha-decarboxylaseSchmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.
(2003) Embo J. 22: 6193-6204
- PubMed: 14633979
- DOI: 10.1093/emboj/cdg575
- Primary Citation of Related Structures:  1PPY, 1PQE, 1PQF, 1PQH, 1PT0, 1PT1, 1PYQ
- Also Cited By: 2C45
- PubMed Abstract:
- Crystal structure of aspartate decarboxylase at 2.2A resolution provides evidence for an ester in protein self-processing
Albert, A.,Dhanaraj, V.,Genschel, U.,Khan, G.,Ramjee, M.K.,Pulido, R.,Sibanda, B.L.,von Delft, F.,Witty, M.,Blundell, T.L.,Smith, A.G.,Abell, C.
(1998) Nat.Struct.Mol.Biol. 5: 289
- Purification and properties of L-Aspartate-alpha-decarboxylase, an enzyme that catalyzes the formation of beta-alanine in Escherichia coli
Williamson, J.M.,Brown, G.M.
(1979) J.Biol.Chem. 254: 8074
- Escherichia coli L-aspartate-alpha-decarboxylase: preprotein processing and observation of reaction intermediates by electrospray mass spectrometry
Ramjee, M.K.,Genschel, U.,Abell, C.,Smith, A.G.
(1997) Biochem.J. 323: 661
Aspartate decarboxylase, which is translated as a pro-protein, undergoes intramolecular self-cleavage at Gly24-Ser25. We have determined the crystal structures of an unprocessed native precursor, in addition to Ala24 insertion, Ala26 insertion and Gl ...
Aspartate decarboxylase, which is translated as a pro-protein, undergoes intramolecular self-cleavage at Gly24-Ser25. We have determined the crystal structures of an unprocessed native precursor, in addition to Ala24 insertion, Ala26 insertion and Gly24-->Ser, His11-->Ala, Ser25-->Ala, Ser25-->Cys and Ser25-->Thr mutants. Comparative analyses of the cleavage site reveal specific conformational constraints that govern self-processing and demonstrate that considerable rearrangement must occur. We suggest that Thr57 Ogamma and a water molecule form an 'oxyanion hole' that likely stabilizes the proposed oxyoxazolidine intermediate. Thr57 and this water molecule are probable catalytic residues able to support acid-base catalysis. The conformational freedom in the loop preceding the cleavage site appears to play a determining role in the reaction. The molecular mechanism of self-processing, presented here, emphasizes the importance of stabilization of the oxyoxazolidine intermediate. Comparison of the structural features shows significant similarity to those in other self-processing systems, and suggests that models of the cleavage site of such enzymes based on Ser-->Ala or Ser-->Thr mutants alone may lead to erroneous interpretations of the mechanism.
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