1PVC | pdb_00001pvc

REFINEMENT OF THE SABIN STRAIN OF TYPE 3 POLIOVIRUS AT 2.4 ANGSTROMS AND THE CRYSTAL STRUCTURES OF ITS VARIANTS AT 2.9 ANGSTROMS RESOLUTION

PDB DOI: https://doi.org/10.2210/pdb1PVC/pdb

Classification: VIRUS
Organism(s): Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Mutation(s): No

Deposited: 1995-03-30 Released: 1995-09-15
Deposition Author(s): Syed, R., Filman, D.J., Hogle, J.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Observed:
0.205 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution

Syed, R., Filman, D.J., Hogle, J.M.

To be published.

Macromolecule Content

Total Structure Weight: 98.41 kDa
Atom Count: 7,075
Modeled Residue Count: 846
Deposited Residue Count: 882
Unique protein chains: 5

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	A [auth 0]	4	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	B [auth 1]	301	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302 Go to UniProtKB: P03302
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03302
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	C [auth 2]	271	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302 Go to UniProtKB: P03302
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03302
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	D [auth 3]	238	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302 Go to UniProtKB: P03302
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03302
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	E [auth 4]	68	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302 Go to UniProtKB: P03302
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03302
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SPH Query on SPH Download:Ideal Coordinates CCD File SDF format, chain F [auth 1] MOL2 format, chain F [auth 1] mmCIF format, chain F [auth 1]	F [auth 1]	SPHINGOSINE C₁₈ H₃₇ N O₂ WWUZIQQURGPMPG-MSOLQXFVSA-N		Interactions Focus chain F [auth 1]
MYR Query on MYR Download:Ideal Coordinates CCD File SDF format, chain G [auth 4] MOL2 format, chain G [auth 4] mmCIF format, chain G [auth 4]	G [auth 4]	MYRISTIC ACID C₁₄ H₂₈ O₂ TUNFSRHWOTWDNC-UHFFFAOYSA-N		Interactions Focus chain G [auth 4]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Observed: 0.205 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 321.06	α = 90
b = 358.62	β = 90
c = 381.82	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 1995-09-15

Deposition Author(s):

Syed, R.

Filman, D.J.

Hogle, J.M.

Revision History (Full details and data files)

Version 1.0: 1995-09-15
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-06-05
Changes: Data collection, Database references, Derived calculations, Other
Version 1.4: 2024-10-30
Changes: Structure summary