1PID | pdb_00001pid

BOVINE DESPENTAPEPTIDE INSULIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å

wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history

Literature

A model of insulin fibrils derived from the x-ray crystal structure of a monomeric insulin (despentapeptide insulin).

Brange, J.Dodson, G.G.Edwards, D.J.Holden, P.H.Whittingham, J.L.

(1997) Proteins 27: 507-516

  • Primary Citation Related Structures: 
    1PID

  • PubMed Abstract: 

    The crystal structure of despentapeptide insulin, a monomeric insulin, has been refined at 1.3 A spacing and subsequently used to predict and model the organization in the insulin fibril. The model makes use of the contacts in the densely packed despentapeptide insulin crystal, and takes into account other experimental evidence, including binding studies with Congo red. The dimensions of this model fibril correspond well with those measured experimentally, and the monomer-monomer contacts within the fibril are in accordance with the known physical chemistry of insulin fibrils. Using this model, it may be possible to predict mutations in insulin that might alleviate problems associated with fibril formation during insulin therapy.


  • Organizational Affiliation
    • Department of Chemistry, University of York, Heslington, England.

Macromolecule Content 

  • Total Structure Weight: 10.36 kDa 
  • Atom Count: 823 
  • Modeled Residue Count: 92 
  • Deposited Residue Count: 92 
  • Unique protein chains: 2

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
DESPENTAPEPTIDE INSULIN
A, C
21Bos taurusMutation(s): 0 
UniProt
Find proteins for P01317 (Bos taurus)
Explore P01317 
Go to UniProtKB:  P01317
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01317
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
DESPENTAPEPTIDE INSULIN
B, D
25Bos taurusMutation(s): 0 
UniProt
Find proteins for P01317 (Bos taurus)
Explore P01317 
Go to UniProtKB:  P01317
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01317
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
Space Group: C 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.7α = 90
b = 26.18β = 93
c = 51.71γ = 90
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1996-12-07
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-11-16
    Changes: Atomic model
  • Version 1.4: 2024-06-05
    Changes: Data collection, Database references, Other
  • Version 1.5: 2024-10-23
    Changes: Structure summary