1PHQ

Crystal structure of KDO8P synthase in its binary complex with substrate analog E-FPEP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.235 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystallographic Analysis of the Phosphoenol Pyruvate Binding Site in E. Coli KDO8P Synthase

Vainer, R.Adir, N.Baasov, T.Belakhov, V.Rabkin, E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2-dehydro-3-deoxyphosphooctonate aldolase
A
284Escherichia coli (strain K12)Gene Names: kdsA
EC: 2.5.1.55
Find proteins for P0A715 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A715
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FPE
Query on FPE

Download SDF File 
Download CCD File 
A
3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID
C3 H6 F O6 P
BNOCDEBUFVJMQI-REOHCLBHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.235 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 117.783α = 90.00
b = 117.783β = 90.00
c = 117.783γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
CNSphasing
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-07-13
    Type: Initial release
  • Version 1.1: 2008-04-29
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance