Biological Assembly 1  

 3D View: Structure

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Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 36940.50 
• Atom Count: 2035 
• Residue Count: 327 
• Unique protein chains: 1

1PDG

CRYSTAL STRUCTURE OF HUMAN PLATELET-DERIVED GROWTH FACTOR BB

• DOI: 10.2210/pdb1PDG/pdb

• Classification: GROWTH FACTOR
• Organism(s): Homo sapiens


• Deposited: 1992-07-14 Released: 1994-01-31 
• Deposition Author(s): Oefner, C., Darcy, A.D., Winkler, F.K., Eggimann, B., Hosnag, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3 Å

Literature

Crystal structure of human platelet-derived growth factor BB.

Oefner, C., D'Arcy, A., Winkler, F.K., Eggimann, B., Hosang, M.

(1992) EMBO J. 11: 3921-3926

• PubMed: 1396586 


• PubMed Abstract: 
  

The crystal structure of the homodimeric BB isoform of human recombinant platelet-derived growth factor (PDGF-BB) has been determined by X-ray analysis to 3.0 A resolution. The polypeptide chain is folded into two highly twisted antiparallel pairs of beta-strands and contains an unusual knotted arrangement of three intramolecular disulfide bonds. Dimerization leads to the clustering of three surface loops at each end of the elongated dimer, which most probably form the receptor recognition sites.

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Organizational Affiliation: 

Department of Pharmaceutical Research--New Technologies, F. Hoffmann-La Roche Ltd., Basel, Switzerland.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
PLATELET-DERIVED GROWTH FACTOR BB	A, B, C	109	Homo sapiens	Mutation(s): 0  Gene Names: PDGFB (PDGF2, SIS)
Find proteins for P01127 (Homo sapiens) Go to Gene View: PDGFB Go to UniProtKB:  P01127

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3 Å
• Space Group: C 1 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 147.300	α = 90.00
b = 31.800	β = 98.70
c = 90.100	γ = 90.00

Software Package:

Software Name	Purpose
PROLSQ	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1992-07-14 
• Released Date: 1994-01-31 
• Deposition Author(s): Oefner, C., Darcy, A.D., Winkler, F.K., Eggimann, B., Hosnag, M.

Revision History 

• Version 1.0: 1994-01-31
  Type: Initial release
• Version 1.1: 2008-03-24
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance
• Version 1.3: 2017-11-29
  Type: Derived calculations, Other