1PBZ | pdb_00001pbz

DE NOVO DESIGNED PEPTIDE-METALLOPORPHYRIN COMPLEX, SOLUTION STRUCTURE


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 14 
  • Selection Criteria: NO RESTRAINT VIOLATIONS GREATER THAN 0.3 ANGSTROMS 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

De novo designed cyclic-peptide heme complexes

Rosenblatt, M.M.Wang, J.Suslick, K.S.

(2003) Proc Natl Acad Sci U S A 100: 13140-13145

  • DOI: https://doi.org/10.1073/pnas.2231273100
  • Primary Citation Related Structures: 
    1PBZ

  • PubMed Abstract: 

    The structural characterization of de novo designed metalloproteins together with determination of chemical reactivity can provide a detailed understanding of the relationship between protein structure and functional properties. Toward this goal, we have prepared a series of cyclic peptides that bind to water-soluble metalloporphyrins (FeIII and CoIII). Neutral and positively charged histidine-containing peptides bind with a high affinity, whereas anionic peptides bind only weakly to the negatively charged metalloporphyrin. Additionally, it was found that the peptide becomes helical only in the presence of the metalloporphyrin. CD experiments confirm that the metalloporphyrin binds specific cyclic peptides with high affinity and with isodichroic behavior. Thermal unfolding experiments show that the complex has "native-like" properties. Finally, NMR spectroscopy produced well dispersed spectra and experimental restraints that provide a high-resolution solution structure of the complexed peptide.


  • Organizational Affiliation
    • Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL 61801, USA.

Macromolecule Content 

  • Total Structure Weight: 3.88 kDa 
  • Atom Count: 269 
  • Modeled Residue Count: 38 
  • Deposited Residue Count: 38 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
De novo designed cyclic peptide
A, B
19N/AMutation(s): 0 

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PC3

Query on PC3



Download:Ideal Coordinates CCD File
C [auth A]COPROPORPHYRIN I CONTAINING CO(III)
C36 H36 Co N4 O8
YMJSUHOSFAHJRH-MXOXSBADSA-N

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 14 
  • Selection Criteria: NO RESTRAINT VIOLATIONS GREATER THAN 0.3 ANGSTROMS 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-12-09
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-11-06
    Changes: Data collection, Structure summary