1P58

Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Visualization of membrane protein domains by cryo-electron microscopy of dengue virus

Zhang, W.Chipman, P.R.Corver, J.Johnson, P.R.Zhang, Y.Mukhopadhyay, S.Baker, T.S.Strauss, J.H.Rossmann, M.G.Kuhn, R.J.

(2003) Nat Struct Biol 10: 907-912

  • DOI: 10.1038/nsb990
  • Primary Citation of Related Structures:  
    1P58

  • PubMed Abstract: 
  • Improved technology for reconstructing cryo-electron microscopy (cryo-EM) images has now made it possible to determine secondary structural features of membrane proteins in enveloped viruses. The structure of mature dengue virus particles was determined to a resolution of 9 ...

    Improved technology for reconstructing cryo-electron microscopy (cryo-EM) images has now made it possible to determine secondary structural features of membrane proteins in enveloped viruses. The structure of mature dengue virus particles was determined to a resolution of 9.5 A by cryo-EM and image reconstruction techniques, establishing the secondary structural disposition of the 180 envelope (E) and 180 membrane (M) proteins in the lipid envelope. The alpha-helical 'stem' regions of the E molecules, as well as part of the N-terminal section of the M proteins, are buried in the outer leaflet of the viral membrane. The 'anchor' regions of E and the M proteins each form antiparallel E-E and M-M transmembrane alpha-helices, leaving their C termini on the exterior of the viral membrane, consistent with the predicted topology of the unprocessed polyprotein. This is one of only a few determinations of the disposition of transmembrane proteins in situ and shows that the nucleocapsid core and envelope proteins do not have a direct interaction in the mature virus.


    Related Citations: 
    • Structure of Dengue Virus: Implications for Flaviviruses Organization, Maturation and Fusion
      Kuhn, R.J., Zhang, W., Rossmann, M.G., Pletnev, S.V., Corver, J., Lenches, E., Jones, C.T., Mukhopadhyay, S., Chipman, P.R., Strauss, E.G., Baker, T.S., Strauss, J.H.
      (2002) Cell 108: 717
    • The envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution
      Rey, F.A., Heinz, F.X., Mandl, C., Kunz, C., Harrison, S.C.
      (1995) Nature 375: 291
    • Virology. When it's better to lie low.
      Kuhn, R.J., Rossmann, M.G.
      (1995) Nature 375: 275
    • Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs
      Baker, T.S., Olson, N.H., Fuller, S.D.
      (1999) Microbiol Mol Biol Rev 63: 862

    Organizational Affiliation

    Department of Biological Sciences, Lilly Hall, 915 W. State Street, Purdue University, West Lafayette, Indiana 47907, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Major envelope protein EA, B, C495Dengue virus 2 Puerto Rico/PR159-S1/1969Mutation(s): 0 
EC: 3.4.21.91 (UniProt), 3.6.1.15 (UniProt), 3.6.4.13 (UniProt), 2.1.1.56 (UniProt), 2.1.1.57 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P14337 (Dengue virus type 2 (isolate Thailand/0168/1979))
Explore P14337 
Go to UniProtKB:  P14337
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Envelope protein MD, E, F75Dengue virus 2 Puerto Rico/PR159-S1/1969Mutation(s): 0 
EC: 3.4.21.91 (UniProt), 3.6.1.15 (UniProt), 3.6.4.13 (UniProt)
Find proteins for Q9WDA7 (Dengue virus 2)
Explore Q9WDA7 
Go to UniProtKB:  Q9WDA7
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-11-04
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-07-18
    Changes: Data collection