Download MendeleyThe surprising binding mode of a coenzyme A analogue, O-pantetheine-11-pivalate, in the catalytic cavity of bacterial biosynthetic thiolase
Kursula, P., Schmitz, W., Wierenga, R.K.To be published.
1OU6
Biosynthetic thiolase from Zoogloea ramigera in complex with acetyl-O-pantetheine-11-pivalate
- PDB DOI: https://doi.org/10.2210/pdb1OU6/pdb
- Classification: TRANSFERASE
- Organism(s): Zoogloea ramigera
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2003-03-24 Released: 2004-06-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.07 Å
- R-Value Free: 0.212
- R-Value Work: 0.161
- R-Value Observed: 0.163
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acetyl-CoA acetyltransferase | 392 | Zoogloea ramigera | Mutation(s): 1 EC: 2.3.1.9 |  | |
UniProt | |||||
Find proteins for P07097 (Shinella zoogloeoides) Explore P07097 Go to UniProtKB: P07097 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07097 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 168 Query on 168 | G [auth A], J [auth B] | PANTOTHENYL-AMINOETHANOL-ACETATE PIVALIC ACID C18 H32 N2 O7 MILJVOHYMMUVQM-AWEZNQCLSA-N |  | ||
| SO4 Query on SO4 | E [auth A], F [auth A], H [auth B], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSO Query on CSO | A, B, C, D | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.07 Å
- R-Value Free: 0.212
- R-Value Work: 0.161
- R-Value Observed: 0.163
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.38 | α = 90 |
| b = 78.95 | β = 92.96 |
| c = 148.82 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| XDS | data reduction |
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2004-06-01 Deposition Author(s): Kursula, P., Schmitz, W., Wierenga, R.K.
Revision History (Full details and data files)
- Version 1.0: 2004-06-01
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary
