1OI4 | pdb_00001oi4

Crystal Structure of yhbO from Escherichia coli

PDB DOI: https://doi.org/10.2210/pdb1OI4/pdb

Classification: PFPI/THIJ FAMILY
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2003-06-06 Released: 2003-07-03
Deposition Author(s): Claude, J.B., Abergel, C., Claverie, J.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free:
0.237 (Depositor), 0.217 (DCC)
R-Value Work:
0.187 (Depositor)
R-Value Observed:
0.187 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Yhbo from Escherichia Coli

Claude, J.B., Abergel, C., Claverie, J.M.

To be published.

Macromolecule Content

Total Structure Weight: 42.84 kDa
Atom Count: 3,236
Modeled Residue Count: 366
Deposited Residue Count: 386
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL PROTEIN YHBO	A, B	193	Escherichia coli K-12	Mutation(s): 0 EC: 3.5.1 (UniProt), 3.1.2 (UniProt), 3.5.1.124 (UniProt)
UniProt
Find proteins for P45470 (Escherichia coli (strain K12)) Explore P45470 Go to UniProtKB: P45470
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P45470
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free: 0.237 (Depositor), 0.217 (DCC)
R-Value Work: 0.187 (Depositor)
R-Value Observed: 0.187 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.037	α = 90
b = 72.446	β = 90
c = 75.946	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MOSFLM	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-07-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-07-03
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.