1OHS | pdb_00001ohs

CRYSTAL STRUCTURE OF 5-3-KETOSTEROID ISOMERASE MUTANT Y14F/D38N FROM PSEUDOMONAS TESTOSTERONI COMPLEXED WITH ANDROSTANEDIONE

PDB DOI: https://doi.org/10.2210/pdb1OHS/pdb

Classification: ISOMERASE
Organism(s): Comamonas testosteroni
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2003-05-30 Released: 2005-03-31
Deposition Author(s): Byun, M., Kim, M.-S., Oh, B.-H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.249 (Depositor)
R-Value Work:
0.219 (Depositor)
R-Value Observed:
0.219 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of 5-3-Ketosteroid Isomerase Mutant Y14F/D38N from Pseudomonas Testosteroni Complexed with Androstanedione

Byun, M., Kim, M.-S., Oh, B.-H.

To be published.

Macromolecule Content

Total Structure Weight: 54.49 kDa
Atom Count: 4,262
Modeled Residue Count: 500
Deposited Residue Count: 500
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
STEROID DELTA-ISOMERASE	A, B, C, D	125	Comamonas testosteroni	Mutation(s): 2 EC: 5.3.3.1
UniProt
Find proteins for P00947 (Comamonas testosteroni) Explore P00947 Go to UniProtKB: P00947
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00947
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
5SD Query on 5SD Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth B] SDF format, chain G [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth B] MOL2 format, chain G [auth C] mmCIF format, chain E [auth A] mmCIF format, chain F [auth B] mmCIF format, chain G [auth C]	E [auth A], F [auth B], G [auth C]	5ALPHA-ANDROSTAN-3,17-DIONE C₁₉ H₂₈ O₂ RAJWOBJTTGJROA-WZNAKSSCSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.249 (Depositor)
R-Value Work: 0.219 (Depositor)
R-Value Observed: 0.219 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.418	α = 90
b = 95.616	β = 90.88
c = 60.698	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-03-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-03-31
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-05-08
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.