Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 2.53 kDa 
• Atom Count: 177 
• Modelled Residue Count: 23 
• Deposited Residue Count: 23 
• Unique protein chains: 1

1OEG

PEPTIDE OF HUMAN APOE RESIDUES 267-289, NMR, 5 STRUCTURES AT PH 6.0, 37 DEGREES CELSIUS AND PEPTIDE:SDS MOLE RATIO OF 1:90

• PDB DOI: 10.2210/pdb1OEG/pdb

• Classification: APOLIPOPROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 1996-03-16 Released: 1996-12-07 
• Deposition Author(s): Wang, G., Pierens, G.K., Treleaven, W.D., Sparrow, J.T., Cushley, R.J.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 5 

Literature

Conformations of human apolipoprotein E(263-286) and E(267-289) in aqueous solutions of sodium dodecyl sulfate by CD and 1H NMR.

Wang, G., Pierens, G.K., Treleaven, W.D., Sparrow, J.T., Cushley, R.J.

(1996) Biochemistry 35: 10358-10366

• PubMed: 8756691 
• DOI: 10.1021/bi960934t
• Primary Citation of Related Structures:  
  1OEF, 1OEG


• PubMed Abstract: 
  

Structures of apoE(263-286) and apoE(267-289) have been determined in aqueous solution containing 90-fold molar excess of perdeuterated sodium dodecyl sulfate by CD and 1H NMR. Conformations were calculated by distance geometry based on 370 and 276 NOE distance restraints, respectively. RMSD for superimposing the region 265-284 from an ensemble of 41 structures for apoE(263-286) is 0.64 +/- 0.17 A for backbone atoms (N, C alpha, C = O) and 1.51 +/- 0.13 A for all atoms. The backbone RMSD for an ensemble of 37 structures for apoE(267-289) is 0.74 +/- 0.21 A for the region 268-275 and 0.34 +/- 0.10 A for the region 276-286. A two-domain structure was found for apoE(267-289) with the C-terminal half adopting a very well defined helix and the N-terminal segment 268-275 a less well defined helix, suggesting that the N-terminus may weakly bind to SDS. For apoE(263-286), an amphipathic helix-bend-helix structural motif was found with all hydrophobic side chains on the concave face. The existence of a bend around residues Q273 to G278 is consistent with their temperature coefficients of amide protons as well as secondary shifts of alpha-protons. Comparison of the structures of the two peptides revealed that the enhanced binding of apoE(263-286) to lipid could be attributed to the formation of a hydrophobic cluster consisting of residues W264, F265, L268, and V269. Aromatic side chains are proposed to be especially important in anchoring apolipoprotein fragments to micelles.

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Organizational Affiliation: 

Institute of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
APOLIPOPROTEIN E	A	23	Homo sapiens	Mutation(s): 0  Gene Names: APOE
UniProt & NIH Common Fund Data Resources
Find proteins for P02649 (Homo sapiens) Explore P02649  Go to UniProtKB:  P02649
PHAROS:  P02649

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 5 
• OLDERADO: 1OEG Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1996-03-16 
• Released Date: 1996-12-07 
Deposition Author(s): Wang, G., Pierens, G.K., Treleaven, W.D., Sparrow, J.T., Cushley, R.J.

Revision History  

• Version 1.0: 1996-12-07
  Type: Initial release
  
• Version 1.1: 2008-03-03
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-23
  Changes: Database references, Derived calculations, Other