Native HIV-1 Proteinase

Experimental Data Snapshot

  • Resolution: 2.10 Å
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history


Structural Analysis of the Native and Drug-Resistant HIV-1 Proteinases Complexed with an Aminodiol Inhibitor

Kervinen, J.Thanki, N.Zdanov, A.Tino, J.Barrish, J.Lin, P.F.Colonno, R.Riccardi, K.Samanta, H.Wlodawer, A.

(1996) Protein Pept Lett 3: 399


Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV-1 PROTEASEA, B99Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: gag-pol
EC: (PDB Primary Data), (UniProt), (UniProt), (UniProt), (UniProt), 2.7.7 (UniProt), 3.1 (UniProt)
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B (isolate HXB2))
Explore P04585 
Go to UniProtKB:  P04585
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
Query on 0E8

Download CCD File 
di-tert-butyl {iminobis[(2S,3S)-3-hydroxy-1-phenylbutane-4,2-diyl]}biscarbamate
C30 H45 N3 O6
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
0E8Ki:  100   nM  BindingDB
0E8IC50:  125   nM  BindingDB
0E8IC50:  125   nM  BindingDB
0E8Ki:  100   nM  BindingDB
0E8Ki:  100   nM  Binding MOAD
Experimental Data & Validation

Experimental Data

  • Resolution: 2.10 Å
  • R-Value Work: 0.165 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52α = 90
b = 59.4β = 90
c = 62.2γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction

Structure Validation

View Full Validation Report

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-04-01
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Source and taxonomy, Structure summary, Version format compliance