1NZ9

Solution Structure of the N-utilization substance G (NusG) C-terminal (NGC) domain from Thermus thermophilus

• PDB DOI: https://doi.org/10.2210/pdb1NZ9/pdb

• Classification: TRANSCRIPTION
• Organism(s): Thermus thermophilus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-02-17 Released: 2004-04-06 
• Deposition Author(s): Reay, P., Yamasaki, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 90 
• Conformers Submitted: 31 
• Selection Criteria: structures with the lowest energy, NONE WITH DISTANCE VIOLATIONS > 0.2 ANGSTROMS, NONE WITH DIHEDRAL ANGLE RESTRAINT VIOLATIONS > 2 DEGREES 

Literature

Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus

Reay, P., Yamasaki, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S.

(2004) Proteins 56: 40-51

• PubMed: 15162485 
• DOI: https://doi.org/10.1002/prot.20054
• Primary Citation of Related Structures:  
  1NZ8, 1NZ9


• PubMed Abstract: 
  

  NusG is an essential bacterial protein modulator of transcriptional elongation and termination events, and interacts directly with RNA polymerase and Rho protein. Found also in Archaea, NusG shows stretches of sequence similarity to the eukaryotic transcription elongation factor Spt5. Herein, the three-dimensional solution structure of the bacterial NusG from Thermus thermophilus, which shows 43% amino acid sequence similarity to the Escherichia coli NusG, is described, and a survey of NusG and Spt5 amino acid sequences is presented. Although there is a clear evolutionary and functional relationship between these proteins, it is evident from the structural, sequence, and biochemical data that their binding specificities to both nucleic acids and other proteins differ.

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Organizational Affiliation: 

Age Dimension Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 6.36 kDa 
• Atom Count: 448 
• Modelled Residue Count: 58 
• Deposited Residue Count: 58 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TRANSCRIPTION ANTITERMINATION PROTEIN NUSG	A	58	Thermus thermophilus	Mutation(s): 0  Gene Names: NusG
UniProt
Find proteins for P35872 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P35872  Go to UniProtKB:  P35872

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 90 
• Conformers Submitted: 31 
• Selection Criteria: structures with the lowest energy, NONE WITH DISTANCE VIOLATIONS > 0.2 ANGSTROMS, NONE WITH DIHEDRAL ANGLE RESTRAINT VIOLATIONS > 2 DEGREES 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-04-06 
Deposition Author(s): Reay, P., Yamasaki, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2004-04-06
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-23
  Changes: Data collection, Database references, Derived calculations