1NC5

Structure of Protein of Unknown Function of YteR from Bacillus Subtilis

• PDB DOI: https://doi.org/10.2210/pdb1NC5/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2002-12-04 Released: 2003-07-15 
• Deposition Author(s): Zhang, R., Lozondra, L., Korolev, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.214 
• R-Value Work: 0.187 
• R-Value Observed: 0.187 

Literature

1.6 A crystal structure of YteR protein from Bacillus subtilis, a predicted lyase.

Zhang, R., Minh, T., Lezondra, L., Korolev, S., Moy, S.F., Collart, F., Joachimiak, A.

(2005) Proteins 60: 561-565

• PubMed: 15906318 
• DOI: https://doi.org/10.1002/prot.20410
• Primary Citation of Related Structures:  
  1NC5

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Organizational Affiliation: 

Structural Biology Center, Midwest Center for Structural Genomics, Biosciences, Argonne National Laboratory, 9700 South Cass Ave., Bldg. 202, Argonne, IL 60439, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 43.02 kDa 
• Atom Count: 3,460 
• Modelled Residue Count: 363 
• Deposited Residue Count: 373 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein yTER	A	373	Bacillus subtilis	Mutation(s): 0  Gene Names: YTER EC: 3.2.1.172
UniProt
Find proteins for O34559 (Bacillus subtilis (strain 168)) Explore O34559  Go to UniProtKB:  O34559

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.214 
• R-Value Work: 0.187 
• R-Value Observed: 0.187 
• Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.855	α = 90
b = 91.855	β = 90
c = 179.41	γ = 120

Software Package:

Software Name	Purpose
d*TREK	data scaling
HKL-2000	data reduction
CNS	refinement
d*TREK	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-07-15 
Deposition Author(s): Zhang, R., Lozondra, L., Korolev, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2003-07-15
  Type: Initial release
  
• Version 1.1: 2008-04-28
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-11
  Changes: Refinement description
• Version 1.4: 2024-02-14
  Changes: Data collection, Database references