1NAG

CREVICE-FORMING MUTANTS IN THE RIGID CORE OF BOVINE PANCREATIC TRYPSIN INHIBITOR: CRYSTAL STRUCTURES OF F22A, Y23A, N43G, AND F45A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Work: 0.163 
  • R-Value Observed: 0.163 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crevice-forming mutants in the rigid core of bovine pancreatic trypsin inhibitor: crystal structures of F22A, Y23A, N43G, and F45A.

Danishefsky, A.T.Housset, D.Kim, K.S.Tao, F.Fuchs, J.Woodward, C.Wlodawer, A.

(1993) Protein Sci 2: 577-587

  • DOI: https://doi.org/10.1002/pro.5560020409
  • Primary Citation of Related Structures:  
    1BPT, 1BTI, 1FAN, 1NAG

  • PubMed Abstract: 
  • Crystal structures of four mutants of bovine pancreatic trypsin inhibitor (F22A, Y23A, N43G, and F45A), engineered to alter their stability properties, have been determined. The mutated residues, which are highly conserved among Kunitz-type inhibitors, are located in the rigid core of the molecule ...

    Crystal structures of four mutants of bovine pancreatic trypsin inhibitor (F22A, Y23A, N43G, and F45A), engineered to alter their stability properties, have been determined. The mutated residues, which are highly conserved among Kunitz-type inhibitors, are located in the rigid core of the molecule. Replacement of the partially buried bulky residues of the wild-type protein with smaller residues resulted in crevices open to the exterior of the molecule. The overall three-dimensional structure of these mutants is very similar to that of the wild-type protein and only small rearrangements are observed among the atoms lining the crevices.


    Related Citations: 
    • Crevice-Forming Mutants of Bovine Pancreatic Trypsin Inhibitor: Stability Changes and New Hydrophobic Surface
      Tao, K.-S.Kim.F., Fuchs, J., Danishefsky, A.T., Housset, D., Wlodawer, A., Woodward, C.
      (1993) Protein Sci 2: 588
    • Crystal Structure of a Y35G Mutant of Bovine Pancreatic Trypsin Inhibitor
      Housset, D., Kim, K.-S., Fuchs, J., Woodward, C., Wlodawer, A.
      (1991) J Mol Biol 220: 757
    • Structural Effects Induced by Removal of a Disulfide-Bridge. The X-Ray Structure of the C30A(Slash)C51A Mutant of Basic Pancreatic Trypsin Inhibitor at 1.6 Angstroms
      Eigenbrot, C., Randal, M., Kossiakoff, A.A.
      (1990) Protein Eng 3: 591
    • X-Ray Crystal Structure of the Protease Inhibitor Domain of Alzheimer'S Amyloid Beta-Protein Precursor
      Hynes, T.R., Randal, M., Kennedy, L.A., Eigenbrot, C., Kossiakoff, A.A.
      (1990) Biochemistry 29: 10018
    • Structure of Form III Crystals of Bovine Pancreatic Trypsin Inhibitor
      Wlodawer, A., Nachman, J., Gilliland, G.L., Gallagher, W., Woodward, C.
      (1987) J Mol Biol 198: 469
    • Comparison of Two Highly Refined Structures of Bovine Pancreatic Trypsin Inhibitor
      Wlodawer, A., Deisenhofer, J., Huber, R.
      (1987) J Mol Biol 193: 145
    • Structure of Bovine Pancreatic Trypsin Inhibitor. Results of Joint Neutron and X-Ray Refinement of Crystal Form II
      Wlodawer, A., Walter, J., Huber, R., Sjolin, L.
      (1984) J Mol Biol 180: 301
    • Pancreatic Trypsin Inhibitor. A New Crystal Form and its Analysis
      Walter, J., Huber, R.
      (1983) J Mol Biol 167: 911

    Organizational Affiliation

    Macromolecular Structure Laboratory, NCI-Frederick Cancer Research and Development Center, ABL, Basic Research Program, Maryland 21702.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
BOVINE PANCREATIC TRYPSIN INHIBITOR58Bos taurusMutation(s): 0 
UniProt
Find proteins for P00974 (Bos taurus)
Explore P00974 
Go to UniProtKB:  P00974
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00974
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
B [auth A]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Work: 0.163 
  • R-Value Observed: 0.163 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.72α = 90
b = 37.98β = 90
c = 23.79γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
PROLSQrefinement
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1993-10-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-07-17
    Changes: Data collection, Other, Refinement description
  • Version 1.4: 2019-08-14
    Changes: Data collection, Refinement description