1N94

Aryl Tetrahydropyridine Inhbitors of Farnesyltransferase: Glycine, Phenylalanine and Histidine Derivates


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.295 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Aryl tetrahydropyridine inhibitors of farnesyltransferase: glycine, phenylalanine and histidine derivatives.

Gwaltney II, S.L.O'Connor, S.J.Nelson, L.T.Sullivan, G.M.Imade, H.Wang, W.Hasvold, L.Li, Q.Cohen, J.Gu, W.Z.Tahir, S.K.Bauch, J.Marsh, K.Ng, S.C.Frost, D.J.Zhang, H.Muchmore, S.Jakob, C.G.Stoll, V.Hutchins, C.Rosenberg, S.H.Sham, H.L.

(2003) Bioorg Med Chem Lett 13: 1359-1362

  • DOI: 10.1016/s0960-894x(03)00095-7
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Inhibitors of farnesyltransferase are effective against a variety of tumors in mouse models of cancer. Clinical trials to evaluate these agents in humans are ongoing. In our effort to develop new farnesyltransferase inhibitors, we have discovered a s ...

    Inhibitors of farnesyltransferase are effective against a variety of tumors in mouse models of cancer. Clinical trials to evaluate these agents in humans are ongoing. In our effort to develop new farnesyltransferase inhibitors, we have discovered a series of aryl tetrahydropyridines that incorporate substituted glycine, phenylalanine and histidine residues. The design, synthesis, SAR and biological properties of these compounds will be discussed.


    Organizational Affiliation

    Pharmaceutical Discovery, R47B, Building AP-10, Abbott Laboratories, Abbott Park, IL 60064-6101, USA. stephen.gwaltney@syrrx.com



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein farnesyltransferase alpha subunit
A
315Rattus norvegicusMutation(s): 0 
Gene Names: Fnta
EC: 2.5.1 (PDB Primary Data), 2.5.1.58 (UniProt), 2.5.1.59 (UniProt)
Find proteins for Q04631 (Rattus norvegicus)
Go to UniProtKB:  Q04631

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Protein farnesyltransferase beta subunit
B
397Rattus norvegicusMutation(s): 0 
Gene Names: Fntb
EC: 2.5.1 (PDB Primary Data), 2.5.1.58 (UniProt)
Find proteins for Q02293 (Rattus norvegicus)
Go to UniProtKB:  Q02293
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TIN
Query on TIN

Download CCD File 
A
2-{(5-{[BUTYL-(2-CYCLOHEXYL-ETHYL)-AMINO]-METHYL}-2'-METHYL-BIPHENYL-2-CARBONYL)-AMINO]-4-METHYLSULFANYL-BUTYRIC ACID
C32 H46 N2 O3 S
GAQHYZNOMLXSEA-PMERELPUSA-N
 Ligand Interaction
HFP
Query on HFP

Download CCD File 
A
ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID
C15 H33 O4 P
IJNCEETVCWDDQB-KFWWJZLASA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
TINEC50:  16   nM  BindingDB
TINIC50:  1.100000023841858   nM  BindingDB
TINIC50:  1.100000023841858   nM  PDBBind
TINIC50:  1   nM  BindingDB
TINEC50:  16   nM  BindingDB
TINIC50:  1.100000023841858   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.295 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 172.106α = 90
b = 172.106β = 90
c = 69.404γ = 120
Software Package:
Software NamePurpose
MAR345data collection
SCALEPACKdata scaling
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-01-07
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Refinement description