1MX7

Two homologous rat cellular retinol-binding proteins differ in local structure and flexibility


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 25 
  • Conformers Submitted: 22 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Two Homologous Rat Cellular Retinol-binding Proteins Differ in Local Conformational Flexibility.

Lu, J.Cistola, D.P.Li, E.

(2003) J Mol Biol 330: 799-812

  • DOI: 10.1016/s0022-2836(03)00629-6
  • Primary Citation of Related Structures:  
    1MX8, 1MX7

  • PubMed Abstract: 
  • Cellular retinol-binding protein I (CRBP I) and cellular retinol-binding protein II (CRBP II) are closely homologous proteins that play distinct roles in the maintenance of vitamin A homeostasis. The solution structure and dynamics of CRBP I and CRBP II were compared by multidimensional NMR techniques ...

    Cellular retinol-binding protein I (CRBP I) and cellular retinol-binding protein II (CRBP II) are closely homologous proteins that play distinct roles in the maintenance of vitamin A homeostasis. The solution structure and dynamics of CRBP I and CRBP II were compared by multidimensional NMR techniques. These studies indicated that differences in the mean backbone structures of CRBP I and CRBP II were localized primarily to the alphaII helix. Intraligand NOE cross-peaks were detected for the hydroxyl proton in the NOESY spectrum of CRBP I-bound retinol, but not for CRBP II-bound retinol, indicating that the conformational dynamics of retinol binding are different for these two proteins. As determined by Lipari-Szabo formalism, both the apo and holo forms of CRBP I and CRBP II are conformationally rigid on the pico- to nanosecond timescale. transverse relaxation optimized spectroscopy-Carr-Purcell-Meiboom-Gill -based 15N relaxation dispersion experiments at both 500 MHz and 600 MHz magnetic fields revealed that 84 and 62 residues for apo-CRBP I and II, respectively, showed detectable conformational exchange on a micro- to millisecond timescale, in contrast to three and seven residues for holo-CRBP I and II, respectively. Thus binding of retinol markedly reduced conformational flexibility in both CRBP I and CRBP II on the micro- to millisecond timescale. The 15N relaxation dispersion curves of apo-CRBP I and II were fit to a two-state conformational exchange model by a global iterative fitting process and by an individual (residue) fitting process. In the process of carrying out the global fit, more than half of the residue sites were eliminated. The individual chemical exchange rates k(ex), and chemical shift differences, Deltadelta, were increased in the putative portal region (alphaII helix and betaC-betaD turn) of apo-CRBP II compared to apo-CRBP I. These differences in conformational flexibility likely contribute to differences in how CRBP I and CRBP II interact with ligands, membranes and retinoid metabolizing enzymes.


    Related Citations: 
    • Binding of retinol induces changes in rat cellular retinol-binding protein II conformation and backbone dynamics
      Lu, J., Lin, C.L., Tang, C., Ponder, J.W., Kao, J.L., Cistola, D.P., Li, E.
      (2000) J Mol Biol 300: 619
    • The structure and dynamics of rat apo-cellular retinol-binding protein II in solution: comparison with the X-ray structure
      Lu, J., Lin, C.L., Tang, C., Ponder, J.W., Kao, J.L.F., Cistola, D.P., Li, E.
      (1999) J Mol Biol 286: 1179
    • Crystallographic studies on a family of cellular lipophilic transport proteins. Refinement of P2 myelin protein and the structure determination and refinement of cellular retinol-binding protein in complex with all-trans-retinol
      Cowan, S.W., Newcomer, M.E., Jones, T.A.
      (1993) J Mol Biol 230: 1225
    • Crystal structures of holo and apo-cellular retinol-binding protein II
      Winter, N.S., Bratt, J.M., Banaszak, L.J.
      (1993) J Mol Biol 230: 1247
    • Structure and backbone dynamics of apo- and holo-cellular retinal-binding protein in solution
      Franzoni, L., Lucke, C., Perez, C., Cavazzini, D., Rademacher, M., Ludwig, C., Spisni, A., Rossi, G.L., Ruterjans, H.
      (2002) J Biol Chem 277: 21983

    Organizational Affiliation

    Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CELLULAR RETINOL-BINDING PROTEIN I, APO A134Rattus norvegicusMutation(s): 0 
Gene Names: RBP1 or RBP-1Rbp1Rbp-1
Find proteins for P02696 (Rattus norvegicus)
Explore P02696 
Go to UniProtKB:  P02696
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 25 
  • Conformers Submitted: 22 
  • Selection Criteria: target function 
  • OLDERADO: 1MX7 Olderado

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-07-29
    Type: Initial release
  • Version 1.1: 2007-10-21
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance