1MV5

Crystal structure of LmrA ATP-binding domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.251 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of LmrA ATP-binding domain reveals the two-site alternating mechanism at molecular level

Yuan, Y.Chen, H.Patel, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Multidrug resistance ABC transporter ATP-binding and permease protein
A, B, C, D
243Lactococcus lactis subsp. lactis (strain IL1403)Gene Names: lmrA
EC: 3.6.3.44
Find proteins for Q9CHL8 (Lactococcus lactis subsp. lactis (strain IL1403))
Go to UniProtKB:  Q9CHL8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download SDF File 
Download CCD File 
A, C
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
B, D
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.251 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 141.866α = 90.00
b = 141.866β = 90.00
c = 120.965γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
CNSphasing
HKL-2000data collection
CNSrefinement
X-PLORrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-12-02
    Type: Initial release
  • Version 1.1: 2008-04-28
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance