1MUW

The 0.86 Angstrom Structure of Xylose Isomerase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.86 Å
  • R-Value Free: 0.143 
  • R-Value Work: 0.124 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Active Site Dynamics at 0.86A: Crystallographic Analysis of a Metal-Mediated Hydride Shift

Fenn, T.D.Ringe, D.Petsko, G.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
XYLOSE ISOMERASE
A
386Streptomyces olivochromogenesMutation(s): 0 
Gene Names: xylA
EC: 5.3.1.5
Find proteins for P15587 (Streptomyces olivochromogenes)
Go to UniProtKB:  P15587
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
OH
Query on OH

Download SDF File 
Download CCD File 
A
HYDROXIDE ION
H O
XLYOFNOQVPJJNP-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.86 Å
  • R-Value Free: 0.143 
  • R-Value Work: 0.124 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 85.906α = 90.00
b = 92.883β = 90.00
c = 98.321γ = 90.00
Software Package:
Software NamePurpose
SHELXL-97refinement
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
CNSphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2002-11-06
    Type: Initial release
  • Version 1.1: 2008-04-28
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2019-07-24
    Type: Data collection, Refinement description