Biological Assembly 1  

 3D View: Structure | Electron Density

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Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

 3D View: Structure | Electron Density

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 87022.88 
• Atom Count: 5963 
• Residue Count: 718 
• Unique protein chains: 1
• Unique nucleic acid chains: 1

1M8Y

CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE2-10 RNA

• DOI: 10.2210/pdb1M8Y/pdb
• NDB: PR0081

• Classification: RNA BINDING PROTEIN/RNA
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2002-07-26 Released: 2002-09-25 
• Deposition Author(s): Wang, X., McLachlan, J., Zamore, P.D., Hall, T.M.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.286 
• R-Value Work: 0.214 

Literature

MODULAR RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY DOMAIN

Wang, X., McLachlan, J., Zamore, P.D., Hall, T.M.T.

(2002) Cell 110: 501-512

• PubMed: 12202039 
• Primary Citation of Related Structures:  
  1M8X, 1M8W


• PubMed Abstract: 
  

Puf proteins are developmental regulators that control mRNA stability and translation by binding sequences in the 3' untranslated regions of their target mRNAs. We have determined the structure of the RNA binding domain of the human Puf protein, Pumilio1, bound to a high-affinity RNA ligand. The RNA binds the concave surface of the molecule, where each of the protein's eight repeats makes contacts with a different RNA base via three amino acid side chains at conserved positions. We have mutated these three side chains in one repeat, thereby altering the sequence specificity of Pumilio1. Thus, the high affinity and specificity of the PUM-HD for RNA is achieved using multiple copies of a simple repeated motif.

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Related Citations: 

• Crystal structure of a Pumilio Homology Domain
  Wang, X.,Zamore, P.D.,Hall, T.M.T.
  (2001) Mol.Cell 7: 855




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Organizational Affiliation: 

Laboratory of Structural Biology, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Pumilio 1	A, B	349	Homo sapiens	Mutation(s): 0  Gene Names: PUM1 (KIAA0099, PUMH1)
Find proteins for Q14671 (Homo sapiens) Go to Gene View: PUM1 Go to UniProtKB:  Q14671

Entity ID: 1
Molecule	Chains	Length	Organism
5'-R(P*AP*UP*UP*GP*UP*AP*CP*AP*UP*A)-3'	C,D	10	N/A

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.286 
• R-Value Work: 0.214 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 35.840	α = 90.00
b = 59.730	β = 90.00
c = 340.850	γ = 90.00

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
MOLREP	phasing
DENZO	data reduction
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2002-07-26 
• Released Date: 2002-09-25 
• Deposition Author(s): Wang, X., McLachlan, J., Zamore, P.D., Hall, T.M.T.

Revision History 

• Version 1.0: 2002-09-25
  Type: Initial release
• Version 1.1: 2008-04-28
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance