1M39 | pdb_00001m39

Solution structure of the C-terminal fragment (F86-I165) of the human centrin 2 in calcium saturated form


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 76 
  • Conformers Submitted: 25 
  • Selection Criteria: structures with the least restraint violations, structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1M39

This is version 1.4 of the entry. See complete history

Literature

C-terminal half of human centrin 2 behaves like a regulatory EF-hand domain

Matei, E.Miron, S.Blouquit, Y.Duchambon, P.Durussel, P.Cox, J.A.Craescu, C.T.

(2003) Biochemistry 42: 1439-1450

  • DOI: https://doi.org/10.1021/bi0269714
  • Primary Citation Related Structures: 
    1M39

  • PubMed Abstract: 

    Human centrin 2 (HsCen2) is an EF-hand protein that plays a critical role in the centrosome duplication and separation during cell division. We studied the structural and Ca(2+)-binding properties of two C-terminal fragments of this protein: SC-HsCen2 (T94-Y172), covering two EF-hands, and LC-HsCen2 (M84-Y172), having 10 additional residues. Both fragments are highly disordered in the apo state but become better structured (although not conformationally homogeneous) in the presence of Ca(2+) and depending on the nature of the cations (K(+) or Na(+)) in the buffer. Only the longer C-terminal domain, in the Ca(2+)-saturated state and in the presence of Na(+) ions, was amenable to structure determination by nuclear magnetic resonance. The solution structure of LC-HsCen2 reveals an open two EF-hand structure, similar to the conformation of related Ca(2+)-saturated regulatory domains. Unexpectedly, the N-terminal helix segment (F86-T94) lies over the exposed hydrophobic cavity. This unusual intramolecular interaction increases considerably the Ca(2+) affinity and constitutes a useful model for the target binding.


  • Organizational Affiliation
    • INSERM U350 and Institut Curie-Recherche, Centre Universitaire, Bâtiments 110-112, 91405 Orsay, France.

Macromolecule Content 

  • Total Structure Weight: 10.39 kDa 
  • Atom Count: 649 
  • Modeled Residue Count: 80 
  • Deposited Residue Count: 89 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Caltractin, isoform 189Homo sapiensMutation(s): 0 
Gene Names: CEN2
UniProt & NIH Common Fund Data Resources
Find proteins for P41208 (Homo sapiens)
Explore P41208 
Go to UniProtKB:  P41208
PHAROS:  P41208
GTEx:  ENSG00000147400 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41208
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 76 
  • Conformers Submitted: 25 
  • Selection Criteria: structures with the least restraint violations, structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-03-25
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection