1LYP | pdb_00001lyp

THE SOLUTION STRUCTURE OF THE ACTIVE DOMAIN OF CAP18: A LIPOPOLYSACCHARIDE BINDING PROTEIN FROM RABBIT LEUKOCYTES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

The solution structure of the active domain of CAP18--a lipopolysaccharide binding protein from rabbit leukocytes.

Chen, C.Brock, R.Luh, F.Chou, P.J.Larrick, J.W.Huang, R.F.Huang, T.H.

(1995) FEBS Lett 370: 46-52

  • DOI: https://doi.org/10.1016/0014-5793(95)00792-8
  • Primary Citation Related Structures: 
    1LYP

  • PubMed Abstract: 

    We have employed the circular dichroism (CD) technique to characterize the solution structure of CAP18(106-137), a lipopolysaccharide (LPS) binding, antimicrobial protein, and its interaction with lipid A. Our results revealed that CAP18(106-137) may exist in at least three lipid A concentration-dependent, primarily helix conformations. The 'model' structure of CAP18(106-137) in 30% (v/v) TFE, determined by nuclear magnetic resonance (NMR) technique, was found to be a complete and very rigid helix. In this conformation, the cationic and hydrophobic groups of CAP18(106-137) are separated into patches and stripes in such a way that it can favorably interact with lipid A through either coulombic interaction with the diphosphoryl groups or hydrophobic interaction with the fatty acyl chains.


  • Organizational Affiliation
    • Division of Structural Biology, Academia Sinica, Nankang, Taipei, Taiwan, ROC.

Macromolecule Content 

  • Total Structure Weight: 3.81 kDa 
  • Atom Count: 268 
  • Modeled Residue Count: 32 
  • Deposited Residue Count: 32 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CAP1832Oryctolagus cuniculusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P25230 (Oryctolagus cuniculus)
Explore P25230 
Go to UniProtKB:  P25230
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25230
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1995-03-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Database references, Derived calculations, Other
  • Version 1.4: 2024-05-22
    Changes: Data collection