1LKY

Structure of the wild-type TEL-SAM polymer

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Native interface of the SAM domain polymer of TEL.

Tran, H.H., Kim, C.A.

(2002) BMC Struct Biol 2: 5-5

  • DOI: 10.1186/1472-6807-2-5
  • Primary Citation of Related Structures:  
    1LKY

  • PubMed Abstract: 

    • TEL is a transcriptional repressor containing a SAM domain that forms a helical polymer. In a number of hematologic malignancies, chromosomal translocations lead to aberrant fusions of TEL-SAM to a variety of other proteins, including many tyrosine kinases ...

    TEL is a transcriptional repressor containing a SAM domain that forms a helical polymer. In a number of hematologic malignancies, chromosomal translocations lead to aberrant fusions of TEL-SAM to a variety of other proteins, including many tyrosine kinases. TEL-SAM polymerization results in constitutive activation of the tyrosine kinase domains to which it becomes fused, leading to cell transformation. Thus, inhibitors of TEL-SAM self-association could abrogate transformation in these cells. In previous work, we determined the structure of a mutant TEL-SAM polymer bearing a Val to Glu substitution in center of the subunit interface. It remained unclear how much the mutation affected the architecture of the polymer, however.

    Organizational Affiliation: 

    Department of Chemistry and Biochemistry, UCLA Laboratory of Structural Biology and Molecular Medicine, Molecular Biology Institute, 90095-1570, USA. htran@mbi.ucla.edu



Macromolecules
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(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
TRANSCRIPTION FACTOR ETV6A, C, E77Homo sapiensMutation(s): 1 
Gene Names: ETV6, TEL, TEL1
Find proteins for P41212 (Homo sapiens)
Explore P41212 
Go to UniProtKB:  P41212
NIH Common Fund Data Resources
PHAROS:  P41212
GTEx:  ENSG00000139083
Protein Feature View
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
TRANSCRIPTION FACTOR ETV6B, D, F77Homo sapiensMutation(s): 1 
Gene Names: ETV6, TEL, TEL1
Find proteins for P41212 (Homo sapiens)
Explore P41212 
Go to UniProtKB:  P41212
NIH Common Fund Data Resources
PHAROS:  P41212
GTEx:  ENSG00000139083
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.232 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.752α = 116.21
b = 60.291β = 98.89
c = 62.318γ = 98.65
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
CNSrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-06-12
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance