1KV6

X-ray structure of the orphan nuclear receptor ERR3 ligand-binding domain in the constitutively active conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural and Functional Evidence for Ligand-Independent Transcriptional Activation by the Estrogen-Related Receptor 3

Greschik, H.Wurtz, J.-M.Sanglier, S.Bourguet, W.van Dorsselaer, A.Moras, D.Renaud, J.-P.

(2002) Mol Cell 9: 303-313

  • DOI: 10.1016/s1097-2765(02)00444-6
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The crystal structure of the ligand binding domain (LBD) of the estrogen-related receptor 3 (ERR3) complexed with a steroid receptor coactivator-1 (SRC-1) peptide reveals a transcriptionally active conformation in absence of any ligand. The structure ...

    The crystal structure of the ligand binding domain (LBD) of the estrogen-related receptor 3 (ERR3) complexed with a steroid receptor coactivator-1 (SRC-1) peptide reveals a transcriptionally active conformation in absence of any ligand. The structure explains why estradiol does not bind ERRs with significant affinity. Docking of the previously reported ERR antagonists, diethylstilbestrol and 4-hydroxytamoxifen, requires structural rearrangements enlarging the ligand binding pocket that can only be accommodated with an antagonist LBD conformation. Mutant receptors in which the ligand binding cavity is filled up by bulkier side chains still interact with SRC-1 in vitro and are transcriptionally active in vivo, but are no longer efficiently inactivated by diethylstilbestrol or 4-hydroxytamoxifen. These results provide structural and functional evidence for ligand-independent transcriptional activation by ERR3.


    Related Citations: 
    • Molecular basis of agonism and antagonism in the oestrogen receptor
      Brzozowski, A.M., Pike, A.C., Dauter, Z., Hubbard, R.E., Bonn, T., Engstrom, O., Ohman, L., Greene, G.L., Gustafsson, J.A.
      (1997) Nature 389: 753
    • The structural basis of estrogen receptor/coactivator recognition and the antagonism of this interaction with tamoxifen
      Shiau, A.K., Barstad, D., Loria, P.M., Cheng, L., Agard, D.A., Greene, G.L.
      (1998) Cell 95: 927
    • X-ray structure of the orphan nuclear receptor RORbeta ligand-binding domain in the active conformation
      Stehlin, C., Wurtz, J.M., Steinmetz, A., Greiner, E., Schuele, R., Moras, D., Renaud, J.P.
      (2001) EMBO J 20: 5822
    • Structural studies on nuclear receptors
      Renaud, J.P., Moras, D.
      (2000) Cell Mol Life Sci 57: 1748

    Organizational Affiliation

    Laboratoire de Biologie et Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, 1 rue Laurent Fries, B.P. 163, 67404 Illkirch, France.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ESTROGEN-RELATED RECEPTOR GAMMA
A, B
230Homo sapiensMutation(s): 0 
Gene Names: NR3B3ESRRGERR3ERRG2KIAA0832
Find proteins for P62508 (Homo sapiens)
Go to UniProtKB:  P62508
NIH Common Fund Data Resources
PHAROS  P62508
Protein Feature View
  • Reference Sequence
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
steroid receptor coactivator 1
C, D
15N/AMutation(s): 0 
Find proteins for Q15788 (Homo sapiens)
Go to UniProtKB:  Q15788
NIH Common Fund Data Resources
PHAROS  Q15788
Protein Feature View
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.233 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.317α = 90
b = 83.317β = 90
c = 240.61γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
CNSrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-01-25
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance