Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation
Levdikov, V., Blagova, L., Bose, N., Momany, C.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Diaminopimelate decarboxylase | A | 425 | Escherichia coli (strain K12) | Mutation(s): 0  Gene Names: lysA EC: 4.1.1.20 |
Find proteins for P00861 (Escherichia coli (strain K12)) Go to UniProtKB:  P00861 |
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DLY Query on DLY | A | D-LYSINE C6 H14 N2 O2 KDXKERNSBIXSRK-RXMQYKEDSA-N | ![]() |  Ligand Interaction | |
LYS Query on LYS | A | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O | ![]() |  Ligand Interaction | |
PLP Query on PLP | A | PYRIDOXAL-5'-PHOSPHATE VITAMIN B6 Phosphate C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N | ![]() |  Ligand Interaction |
Length (Å) | Angle (°) |
---|---|
a = 98.997 | α = 90.00 |
b = 98.997 | β = 90.00 |
c = 176.966 | γ = 120.00 |
Software Name | Purpose |
---|---|
CCP4 | phasing |
DENZO | data reduction |
REFMAC | refinement |
SCALEPACK | data scaling |
CCP4 | model building |