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Download EndnoteDiaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation
Levdikov, V., Blagova, L., Bose, N., Momany, C.To be published.
1KO0
Crystal Structure of a D,L-lysine complex of diaminopimelate decarboxylase
- DOI: 10.2210/pdb1KO0/pdb
- Classification: LYASE
- Organism(s): Escherichia coli (strain K12)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2001-12-19 Released: 2003-11-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.246
- R-Value Work: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DLY Query on DLY | A | D-LYSINE C6 H14 N2 O2 KDXKERNSBIXSRK-RXMQYKEDSA-N |  | Ligand Interaction | |
| LYS Query on LYS | A | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O |  | Ligand Interaction | |
| PLP Query on PLP | A | PYRIDOXAL-5'-PHOSPHATE VITAMIN B6 Phosphate C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.246
- R-Value Work: 0.181
- Space Group: P 61 2 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 98.997 | α = 90.00 |
| b = 98.997 | β = 90.00 |
| c = 176.966 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| CCP4 | phasing |
| DENZO | data reduction |
| REFMAC | refinement |
| SCALEPACK | data scaling |
| CCP4 | model building |
Entry History
Deposition Data
- Deposited Date: 2001-12-19
- Released Date: 2003-11-11
- Deposition Author(s): Levdikov, V., Blagova, L., Bose, N., Momany, C.
