Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis
Gilboa, R., Kilshtein, A., Zharkov, D.O., Kycia, J.H., Gerchman, S.E., Grollman, A.P., Shoham, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
A/G-specific adenine glycosylase | 225 | Escherichia coli | Mutation(s): 1  Gene Names: mutY EC: 3.2.2 (PDB Primary Data), 3.2.2.31 (UniProt) | ||
UniProt | |||||
Find proteins for P17802 (Escherichia coli (strain K12)) Explore P17802  Go to UniProtKB:  P17802 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P17802 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SF4 Query on SF4 | C [auth A] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | D [auth A], E [auth A], F [auth A], G [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 83.49 | α = 90 |
b = 50.12 | β = 122.68 |
c = 70.38 | γ = 90 |
Software Name | Purpose |
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SHELXL-97 | refinement |
SCALEPACK | data scaling |
CNS | refinement |
DENZO | data reduction |
CNS | phasing |