1JZV

Crystal structure of a bulged RNA from the SL2 stem-loop of the HIV-1 psi-RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of a Bulged RNA from the SL2 Stem-loop of the HIV-1 psi-RNA

Xiong, Y.Sudarsanakumar, C.Deng, J.Pan, M.Sundaralingam, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3'A,C8N/A
Entity ID: 2
MoleculeChainsLengthOrganism
5'-R(*CP*AP*GP*UP*AP*CP*GP*(5IC)P*C)-3'B,D9N/A
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
C
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
5BU
Query on 5BU
A, C
RNA LINKINGC9 H12 Br N2 O9 PU
5IC
Query on 5IC
B, D
RNA LINKINGC9 H13 I N3 O8 PC
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.203 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 45.800α = 90.00
b = 45.800β = 90.00
c = 89.650γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
CNSrefinement
SCALEPACKdata scaling
SOLVEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-11-11
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance