1JSD

CRYSTAL STRUCTURE OF SWINE H9 HAEMAGGLUTININ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

H5 avian and H9 swine influenza virus haemagglutinin structures: possible origin of influenza subtypes.

Ha, Y.Stevens, D.J.Skehel, J.J.Wiley, D.C.

(2002) EMBO J. 21: 865-875

  • DOI: 10.1093/emboj/21.5.865
  • Primary Citation of Related Structures:  1JSM

  • PubMed Abstract: 
  • There are 15 subtypes of influenza A virus (H1-H15), all of which are found in avian species. Three caused pandemics in the last century: H1 in 1918 (and 1977), H2 in 1957 and H3 in 1968. In 1997, an H5 avian virus and in 1999 an H9 virus caused outb ...

    There are 15 subtypes of influenza A virus (H1-H15), all of which are found in avian species. Three caused pandemics in the last century: H1 in 1918 (and 1977), H2 in 1957 and H3 in 1968. In 1997, an H5 avian virus and in 1999 an H9 virus caused outbreaks of respiratory disease in Hong Kong. We have determined the three-dimensional structures of the haemagglutinins (HAs) from H5 avian and H9 swine viruses closely related to the viruses isolated from humans in Hong Kong. We have compared them with known structures of the H3 HA from the virus that caused the 1968 H3 pandemic and of the HA--esterase--fusion (HEF) glycoprotein from an influenza C virus. Structure and sequence comparisons suggest that HA subtypes may have originated by diversification of properties that affected the metastability of HAs required for their membrane fusion activities in viral infection.


    Organizational Affiliation

    Department of Molecular and Cellular Biology, Harvard University, 7 Divinity Avenue, Cambridge, MA 02138, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HAEMAGGLUTININ (HA1 CHAIN)
A
319Influenza A virus (A/swine/Hong Kong/9/98(H9N2))N/A
Find proteins for Q91CD4 (Influenza A virus (A/swine/Hong Kong/9/98(H9N2)))
Go to UniProtKB:  Q91CD4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HAEMAGGLUTININ (HA2 CHAIN)
B
176Influenza A virus (A/swine/Hong Kong/9/98(H9N2))N/A
Find proteins for Q91CD4 (Influenza A virus (A/swine/Hong Kong/9/98(H9N2)))
Go to UniProtKB:  Q91CD4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.218 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 108.500α = 90.00
b = 108.500β = 90.00
c = 149.300γ = 120.00
Software Package:
Software NamePurpose
CNSrefinement
MLPHAREphasing
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2001-09-26
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Non-polymer description, Version format compliance