1J9K | pdb_00001j9k

CRYSTAL STRUCTURE OF SURE PROTEIN FROM T.MARITIMA IN COMPLEX WITH TUNGSTATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.231 (Depositor), 0.227 (DCC) 
  • R-Value Work: 
    0.192 (Depositor), 0.189 (DCC) 
  • R-Value Observed: 
    0.192 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Crystal structure and functional analysis of the SurE protein identify a novel phosphatase family.

Lee, J.Y.Kwak, J.E.Moon, J.Eom, S.H.Liong, E.C.Pedelacq, J.D.Berendzen, J.Suh, S.W.

(2001) Nat Struct Biol 8: 789-794

  • DOI: https://doi.org/10.1038/nsb0901-789
  • Primary Citation Related Structures: 
    1J9J, 1J9K, 1J9L

  • PubMed Abstract: 

    Homologs of the Escherichia coli surE gene are present in many eubacteria and archaea. Despite the evolutionary conservation, little information is available on the structure and function of their gene products. We have determined the crystal structure of the SurE protein from Thermotoga maritima. The structure reveals the dimeric arrangement of the subunits and an active site around a bound metal ion. We also demonstrate that the SurE protein exhibits a divalent metal ion-dependent phosphatase activity that is inhibited by vanadate or tungstate. In the vanadate- and tungstate-complexed structures, the inhibitors bind adjacent to the divalent metal ion. Our structural and functional analyses identify the SurE proteins as a novel family of metal ion-dependent phosphatases.


  • Organizational Affiliation
    • School of Chemistry and Molecular Engineering, College of Natural Sciences, Seoul National University, Seoul 151-742, Korea.

Macromolecule Content 

  • Total Structure Weight: 57.27 kDa 
  • Atom Count: 4,277 
  • Modeled Residue Count: 494 
  • Deposited Residue Count: 494 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
STATIONARY PHASE SURVIVAL PROTEIN
A, B
247Thermotoga maritimaMutation(s): 0 
EC: 3.1.3.5
UniProt
Find proteins for P96112 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore P96112 
Go to UniProtKB:  P96112
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP96112
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.231 (Depositor), 0.227 (DCC) 
  • R-Value Work:  0.192 (Depositor), 0.189 (DCC) 
  • R-Value Observed: 0.192 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 114.91α = 90
b = 114.91β = 90
c = 78.54γ = 120
Software Package:
Software NamePurpose
CNSrefinement
MOSFLMdata reduction
CCP4data scaling
CNSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-09-12
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2023-10-25
    Changes: Data collection, Database references, Derived calculations, Refinement description