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Download EndnoteLigand Induced Conformational Transitions of Tissue Factor. Crystal Structure of the Tissue Factor:Factor VIIa Complex.
Huang, M., Ruf, W., Edgington, T.S., Wilson, I.A.To be published.
1J9C
Crystal Structure of tissue factor-factor VIIa complex
- DOI: 10.2210/pdb1J9C/pdb
- Classification: HYDROLASE/HYDROLASE INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus, Escherichia coli
- Deposited: 2001-05-24 Released: 2004-07-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.9 Å
- R-Value Free: 0.299
- R-Value Work: 0.221
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Tissue factor | T | 210 | Homo sapiens | Mutation(s): 0 Gene Names: F3 |
Find proteins for P13726 (Homo sapiens) Go to Gene View: F3 Go to UniProtKB: P13726 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| factor VIIa light chain | L | 95 | Homo sapiens | Mutation(s): 0 Gene Names: F7 EC: 3.4.21.21 |
Find proteins for P08709 (Homo sapiens) Go to Gene View: F7 Go to UniProtKB: P08709 | ||||
Entity ID: 3 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| factor VIIa heavy chain | H | 254 | Homo sapiens | Mutation(s): 0 Gene Names: F7 EC: 3.4.21.21 |
Find proteins for P08709 (Homo sapiens) Go to Gene View: F7 Go to UniProtKB: P08709 | ||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 0Z6 Query on 0Z6 | H | D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide FFRCK C25 H36 Cl N6 O3 ZKHBINZTIMXMQW-CLAROIROSA-O |  | Ligand Interaction | |
| CA Query on CA | H | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| GLC Query on GLC | L | ALPHA-D-GLUCOSE C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N |  | Ligand Interaction | |
| NAG Query on NAG | H | N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
| FUL Query on FUL | L | BETA-L-FUCOSE 6-DEOXY-BETA-L-GALACTOSE C6 H12 O5 SHZGCJCMOBCMKK-KGJVWPDLSA-N |  | Ligand Interaction | |
| Biologically Interesting Molecules 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_000369 (0Z6) Query on PRD_000369 | H | D-Phe-Phe-Arg Chloromethylketone | Peptide-like / Inhibitor | | -- |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.9 Å
- R-Value Free: 0.299
- R-Value Work: 0.221
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 77.038 | α = 90.00 |
| b = 68.302 | β = 92.12 |
| c = 78.438 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| DENZO | data reduction |
Entry History
Deposition Data
- Deposited Date: 2001-05-24
- Released Date: 2004-07-27
- Deposition Author(s): Huang, M., Ruf, W., Edgington, T.S., Wilson, I.A.
Revision History
- Version 1.0: 2004-07-27
Type: Initial release - Version 1.1: 2008-04-27
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance - Version 1.3: 2012-12-12
Type: Other
