Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
TatD-related deoxyribonuclease | 268 | Thermotoga maritima | Mutation(s): 1  Gene Names: TM0667 EC: 3.1.21 | ||
UniProt | |||||
Find proteins for Q9WZD5 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WZD5  Go to UniProtKB:  Q9WZD5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9WZD5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IPA Query on IPA | B [auth A] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 35.05 | α = 90 |
b = 77.25 | β = 90 |
c = 84.53 | γ = 90 |
Software Name | Purpose |
---|---|
Blu-Ice | data collection |
MOSFLM | data reduction |
SCALA | data scaling |
CCP4 | data reduction |
SnB | phasing |
MLPHARE | phasing |
CCP4 | model building |
SOLVE | phasing |
CNS | refinement |
CCP4 | data scaling |
RESOLVE | phasing |