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Download EndnoteCrystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1J6O
Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution
- DOI: 10.2210/pdb1J6O/pdb
- Classification: HYDROLASE
- Organism(s): Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
- Expression System: Escherichia coli
- Deposited: 2002-07-09 Released: 2002-10-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.224
- R-Value Work: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| TatD-related deoxyribonuclease | A | 268 | Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) | Mutation(s): 0 |
Find proteins for Q9WZD5 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Go to UniProtKB: Q9WZD5 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IPA Query on IPA | A | ISOPROPYL ALCOHOL 2-PROPANOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.224
- R-Value Work: 0.190
- Space Group: P 21 21 21
- Diffraction Data DOI:
10.18430/M31J6O Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 35.050 | α = 90.00 |
| b = 77.250 | β = 90.00 |
| c = 84.530 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| CCP4 | model building |
| CNS | refinement |
| RESOLVE | phasing |
| CCP4 | data reduction |
| SCALA | data scaling |
| MLPHARE | phasing |
| MOSFLM | data reduction |
| SOLVE | phasing |
| SnB | phasing |
| CCP4 | data scaling |
| Blu-Ice | data collection |
Entry History
Deposition Data
- Deposited Date: 2002-07-09
- Released Date: 2002-10-30
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2002-10-30
Type: Initial release - Version 1.1: 2008-04-26
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Version format compliance - Version 1.3: 2018-07-18
Type: Advisory, Data collection, Database references
