1J5S | pdb_00001j5s

Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution

• PDB DOI: https://doi.org/10.2210/pdb1J5S/pdb

• Classification: ISOMERASE
• Organism(s): Thermotoga maritima
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2002-07-02 Released: 2002-07-17 
• Deposition Author(s): Joint Center for Structural Genomics (JCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.85 Å
• R-Value Free: 
  0.274 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.234 (Depositor) 

Literature

Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution.

Schwarzenbacher, R., Canaves, J.M., Brinen, L.S., Dai, X., Deacon, A.M., Elsliger, M.A., Eshaghi, S., Floyd, R., Godzik, A., Grittini, C., Grzechnik, S.K., Guda, C., Jaroszewski, L., Karlak, C., Klock, H.E., Koesema, E., Kovarik, J.S., Kreusch, A., Kuhn, P., Lesley, S.A., McMullan, D., McPhillips, T.M., Miller, M.A., Miller, M.D., Morse, A., Moy, K., Ouyang, J., Robb, A., Rodrigues, K., Selby, T.L., Spraggon, G., Stevens, R.C., Van Den Bedem, H., Velasquez, J., Vincent, J., Wang, X., West, B., Wolf, G., Hodgson, K.O., Wooley, J., Wilson, I.A.

(2003) Proteins 53: 142-145

• PubMed: 12945057 
• DOI: https://doi.org/10.1002/prot.10462
• Primary Citation Related Structures: 
  1J5S

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Organizational Affiliation: 
• Joint Center for Structural Genomics, Stanford University, Menlo Park, California, USA.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 161.52 kDa 
• Atom Count: 11,175 
• Modeled Residue Count: 1,351 
• Deposited Residue Count: 1,389 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
URONATE ISOMERASE	A, B, C	463	Thermotoga maritima	Mutation(s): 0  Gene Names: TM0064 EC: 5.3.1.12
UniProt
Find proteins for Q9WXR9 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WXR9  Go to UniProtKB:  Q9WXR9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.85 Å
• R-Value Free:  0.274 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.234 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M31J5S

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.413	α = 115.73
b = 79.962	β = 97.57
c = 89.43	γ = 110.44

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
CCP4	data reduction
CCP4	model building
SOLVE	phasing
RESOLVE	model building
REFMAC	refinement
CCP4	data scaling
CCP4	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2002-07-17 
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Revision History  

• Version 1.0: 2002-07-17
  Type: Initial release
  
• Version 1.1: 2008-04-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-07-18
  Changes: Advisory, Data collection, Database references
• Version 1.4: 2023-01-25
  Changes: Advisory, Database references
• Version 1.5: 2024-05-22
  Changes: Data collection