1J2R

Crystal structure of Escherichia coli gene product Yecd at 1.3 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.145 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of escherichia coli gene product Yecd at 1.3 A resolution

Suhre, K.Claverie, J.-M.Abergel, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypothetical isochorismatase family protein yecD
A, B, C, D
199Escherichia coli (strain K12)Gene Names: yecD
EC: 3.-.-.-
Find proteins for P0ADI7 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ADI7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MPD
Query on MPD

Download SDF File 
Download CCD File 
A, B, C, D
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.145 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 140.502α = 90.00
b = 108.886β = 90.00
c = 50.419γ = 90.00
Software Package:
Software NamePurpose
T-COFFEEphasing
AMoREphasing
TRUNCATEdata scaling
MOSFLMdata reduction
CCP4data scaling
REFMACrefinement
MODELLERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-01-27
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-04
    Type: Refinement description