1J05

The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment

Kondo, H.Nishimura, Y.Shiroishi, M.Asano, R.Noro, N.Tsumoto, K.Kumagai, I.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
anti-CEA mAb T84.66, light chain
L, A
111Mus musculusN/A
Find proteins for P01660 (Mus musculus)
Go to UniProtKB:  P01660
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
anti-CEA mAb T84.66, heavy chain
H, B
121Mus musculusN/A
Find proteins for Q9JL85 (Mus musculus)
Go to UniProtKB:  Q9JL85
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
B, H
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, L
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.185 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 61.774α = 90.00
b = 75.033β = 94.82
c = 63.105γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
SCALAdata scaling
MOSFLMdata reduction
CCP4data scaling
SHELXL-97refinement
CNSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-12-16
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Non-polymer description, Version format compliance