1IFD

MODEL-BUILDING STUDIES OF INOVIRUS: GENETIC VARIATIONS ON A GEOMETRIC THEME


Experimental Data Snapshot

  • Method: FIBER DIFFRACTION
  • Resolution: 4 Å

wwPDB Validation

Currently 1IFD does not have a wwPDB validation report.


This is version 1.2 of the entry. See complete history

Literature

Model-building studies of Inovirus: genetic variations on a geometric theme.

Marvin, D.A.

(1990) Int.J.Biol.Macromol. 12: 125-138

  • Primary Citation of Related Structures:  2IFO
  • Also Cited By: 1HGV, 1HGZ, 1HH0, 1QL1, 1QL2, 2C0W, 2C0X

  • PubMed Abstract: 
  • Inovirus (filamentous bacteriophage) is a simple system for studying the rules by which protein primary structure (amino acid sequence) controls secondary and higher order structure, and thereby function. The virus occurs naturally as a number of dif ...

    Inovirus (filamentous bacteriophage) is a simple system for studying the rules by which protein primary structure (amino acid sequence) controls secondary and higher order structure, and thereby function. The virus occurs naturally as a number of different strains with similar secondary and higher order structure, but the protein subunit that assembles to form the virion coat has quite different primary structures in different virus strains. Despite these differences in primary structure, the subunits of all strains have much the same size, about 50 residues, which are distributed by type in much the same way into three domains of primary structure: a collection of acidic residues in the N-terminal region, a hydrophobic domain of about 19 residues near the middle, and a collection of basic residues near the C-terminus. Each subunit can be closely approximated by an alpha-helix with its long axis roughly parallel to the fibre axis, sloping from large to small radius in the virion and interleaving between subunits in the next turn or level. The acidic residues near the N-terminus of the subunit face outwards on the virion surface, and explain the low isoelectric point of the virion; the basic residues near the C-terminus face inwards, where they neutralize the charge on the DNA at the core of the virion; and the hydrophobic central domain is involved in interactions which bind neighbouring subunits. Detailed X-ray fibre diffraction analysis of one strain gives the subunit structure. Comparative model-building studies of different strains illustrate the common structural principles.


    Related Citations: 
    • X-Ray Fiber Diffraction
      Marvin, D.A.,Nave, C.
      (1982) Structural Molecular Biology --: 3
    • Dynamics of Telescoping Inovirus: A Mechanism for Assembly at Membrane Adhesions
      Marvin, D.A.
      (1989) Int.J.Biol.Macromol. 11: 159
    • Structure of the Protein and DNA in Fd Filamentous Bacterial Virus
      Banner, D.W.,Nave, C.,Marvin, D.A.
      (1981) Nature 289: 814
    • Filamentous Bacterial Viruses
      Marvin, D.A.
      (1985) J.Biosci. 8: 799
    • Filamentous Bacterial Viruses Xii. Molecular Architecture of the Class I (Fd, If1, Ike) Virion
      Marvin, D.A.,Pigram, W.J.,Wiseman, R.L.,Wachtel, E.J.,Marvin, F.J.
      (1974) J.Mol.Biol. 88: 581


    Organizational Affiliation

    Department of Biochemistry, University of Cambridge, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
INOVIRUS
A
50Enterobacteria phage fdGene Names: VIII
Find proteins for P69539 (Enterobacteria phage fd)
Go to UniProtKB:  P69539
Experimental Data & Validation

Experimental Data

  • Method: FIBER DIFFRACTION
  • Resolution: 4 Å
Software Package:
Software NamePurpose
EREFrefinement

Structure Validation

Currently 1IFD does not have a wwPDB validation report.



Entry History 

Deposition Data

  • Deposited Date: 1992-02-16 
  • Released Date: 1994-07-31 
  • Deposition Author(s): Marvin, D.A.

Revision History 

  • Version 1.0: 1994-07-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance