1IC8

HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.312 
  • R-Value Work: 0.254 
  • R-Value Observed: 0.260 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Diabetes mutations delineate an atypical POU domains in HNF1-Alpha

Chi, Y.-I.Frantz, J.D.Oh, B.-C.Hansen, L.Dhe-Paganon, S.Shoelson, S.E.

(2002) Mol Cell 10: 1129-1137

  • DOI: 10.1016/s1097-2765(02)00704-9
  • Primary Citation of Related Structures:  
    1IC8

  • PubMed Abstract: 
  • Mutations in Hnf-1alpha are the most common Mendelian cause of diabetes mellitus. To elucidate the molecular function of a mutational hotspot, we cocrystallized human HNF-1alpha 83-279 with a high-affinity promoter and solved the structure of the complex ...

    Mutations in Hnf-1alpha are the most common Mendelian cause of diabetes mellitus. To elucidate the molecular function of a mutational hotspot, we cocrystallized human HNF-1alpha 83-279 with a high-affinity promoter and solved the structure of the complex. Two identical protein molecules are bound to the promoter. Each contains a homeodomain and a second domain structurally similar to POU-specific domains that was not predicted on the basis of amino acid sequence. Atypical elements in both domains create a stable interface that further distinguishes HNF-1alpha from other flexible POU-homeodomain proteins. The numerous diabetes-causing mutations in HNF-1alpha thus identified a previously unrecognized POU domain which was used as a search model to identify additional POU domain proteins in sequence databases.


    Organizational Affiliation

    Joslin Diabetes Center, Department of Medicine, Harvard Medical School, Boston, MA 02215, USA.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
HEPATOCYTE NUCLEAR FACTOR 1-ALPHAC [auth A], D [auth B]194Homo sapiensMutation(s): 0 
Gene Names: HNF1ATCF1
Find proteins for P20823 (Homo sapiens)
Explore P20823 
Go to UniProtKB:  P20823
NIH Common Fund Data Resources
PHAROS:  P20823
Protein Feature View
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsLengthOrganismImage
5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*GP*A)-3'A [auth E]21N/A
Find similar nucleic acids by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsLengthOrganismImage
5'-D(*TP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*AP*G)-3'B [auth F]21N/A
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.312 
  • R-Value Work: 0.254 
  • R-Value Observed: 0.260 
  • Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.389α = 90
b = 50.389β = 90
c = 207.272γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing
CNSrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-11-27
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-02-01
    Changes: Structure summary
  • Version 1.4: 2018-01-24
    Changes: Database references, Structure summary