1I9C

GLUTAMATE MUTASE FROM CLOSTRIDIUM COCHLEARIUM: COMPLEX WITH ADENOSYLCOBALAMIN AND SUBSTRATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Radical Shuttling in a Protein: Ribose Pseudorotation Controls Alkyl-Radical Transfer in the Coenzyme B(12) Dependent Enzyme Glutamate Mutase

Gruber, K.Reitzer, R.Kratky, C.

(2001) Angew.Chem.Int.Ed.Engl. 40: 3377-3380


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
GLUTAMATE MUTASE
A, C
137Clostridium cochleariumGene Names: glmS
EC: 5.4.99.1
Find proteins for P80078 (Clostridium cochlearium)
Go to UniProtKB:  P80078
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
GLUTAMATE MUTASE
B, D
483Clostridium cochleariumGene Names: glmE
EC: 5.4.99.1
Find proteins for P80077 (Clostridium cochlearium)
Go to UniProtKB:  P80077
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GLU
Query on GLU

Download SDF File 
Download CCD File 
B, D
GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
 Ligand Interaction
2AS
Query on 2AS

Download SDF File 
Download CCD File 
B, D
(2S,3S)-3-methyl-aspartic acid
C5 H9 N O4
LXRUAYBIUSUULX-HRFVKAFMSA-N
 Ligand Interaction
5AD
Query on 5AD

Download SDF File 
Download CCD File 
B, D
5'-DEOXYADENOSINE
C10 H13 N5 O3
XGYIMTFOTBMPFP-KQYNXXCUSA-N
 Ligand Interaction
B12
Query on B12

Download SDF File 
Download CCD File 
A, C
COBALAMIN
C62 H89 Co N13 O14 P
LKVIQTCSMMVGFU-DWSMJLPVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.168 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 64.348α = 90.00
b = 113.139β = 96.00
c = 108.439γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
SHELXL-97refinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2001-03-19 
  • Released Date: 2002-03-19 
  • Deposition Author(s): Gruber, K., Kratky, C.

Revision History 

  • Version 1.0: 2002-03-19
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Non-polymer description, Version format compliance
  • Version 1.3: 2012-10-24
    Type: Non-polymer description