1I6N

1.8 A Crystal structure of IOLI protein with a binding zinc atom


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of Bacillus subtilis ioli shows endonuclase IV fold with altered Zn binding.

Zhang, R.G.Dementieva, I.Duke, N.Collart, F.Quaite-Randall, E.Alkire, R.Dieckman, L.Maltsev, N.Korolev, O.Joachimiak, A.

(2002) Proteins 48: 423-426


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
IOLI PROTEIN
A
278Bacillus subtilis (strain 168)Gene Names: iolI (yxdH)
EC: 5.3.99.11
Find proteins for P42419 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P42419
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.201 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 74.015α = 90.00
b = 104.616β = 90.00
c = 48.462γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
d*TREKdata scaling
HKL-2000data reduction
CNSrefinement
CNSphasing
d*TREKdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2002-03-13
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-04
    Type: Refinement description