1I1B

CRYSTAL STRUCTURE OF RECOMBINANT HUMAN INTERLEUKIN-1BETA AT 2.0 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of recombinant human interleukin-1 beta at 2.0 A resolution.

Finzel, B.C.Clancy, L.L.Holland, D.R.Muchmore, S.W.Watenpaugh, K.D.Einspahr, H.M.

(1989) J Mol Biol 209: 779-791

  • DOI: 10.1016/0022-2836(89)90606-2
  • Primary Citation of Related Structures:  
    1I1B

  • PubMed Abstract: 
  • The crystal structure of recombinant human interleukin-1 beta (IL-1 beta) has been determined at 2.0 A resolution and refined to a crystallographic R-factor of 0.19. Three heavy-atom derivatives were identified and used for multiple isomorphous replacement phasing ...

    The crystal structure of recombinant human interleukin-1 beta (IL-1 beta) has been determined at 2.0 A resolution and refined to a crystallographic R-factor of 0.19. Three heavy-atom derivatives were identified and used for multiple isomorphous replacement phasing. Interpretation of the resulting electron density map revealed a structure in which there are 12 antiparallel beta-strands and no alpha-helix. The single 153-residue polypeptide chain is folded into a six-stranded beta-barrel similar in architecture to the Kunitz-type trypsin inhibitor found in soybeans. The molecule displays approximate 3-fold symmetry about the axis of the beta-barrel. Each successive pair of component strands of the barrel brackets an extensive sequence outside the barrel that includes an additional pair of beta-strands and a prominent loop. Together, these three external segments conceal much of the perimeter and one end of the barrel, leaving only the end supporting the chain termini fully exposed. The structure can be used to identify portions of the polypeptide chain that are exposed on the surface of the molecule, some of which must be epitopes recognized by interleukin-1 beta receptors.


    Related Citations: 
    • Crystallization of Purified Recombinant Human Interleukin-1Beta
      Carter, D.B., Curry, K.A., Tomich, C.-S.C., Yem, A.W., Deibel, M.R., Tracey, D.E., Paslay, J.W., Carter, J.B., Theriault, N.Y., Harris, P.K.W., Reardon, I.M., Zurcher-Neely, H.A., Heinrikson, R.L., Clancy, L.L., Muchmore, S.W., Watenpaugh, K.D., Einspahr, H.M.
      (1988) Proteins 3: 121
    • Crystallization of Recombinant Human Interleukin 1Beta
      Einspahr, H., Clancy, L.L., Muchmore, S.W., Watenpaugh, K.D., Harris, P.K.W., Carter, D.B., Curry, K.A., Tomich, C.-S.C., Yem, A.W., Deibeljunior, M.R., Tracey, D.E., Pasley, J.W., Staite, N.D., Carter, J.B., Theriault, N.Y., Reardon, I.M., Zurcher-Neely, H.A., Heinrikson, R.L.
      (1988) J Cryst Growth 90: 180
    • Crystal Structure of the Cytokine Interleukin-1Beta
      Priestle, J.P., Schaer, H.-P., Gruetter, M.G.
      (1988) EMBO J 7: 339

    Organizational Affiliation

    Physical and Analytical Chemistry, Upjohn Company, Kalamazoo, MI 49001.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
INTERLEUKIN-1 BETAA153Homo sapiensMutation(s): 0 
Gene Names: IL1BIL1F2
UniProt & NIH Common Fund Data Resources
Find proteins for P01584 (Homo sapiens)
Explore P01584 
Go to UniProtKB:  P01584
PHAROS:  P01584
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Observed: 0.189 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.86α = 90
b = 54.86β = 90
c = 77.02γ = 90
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1990-01-15
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other