1HWM
EBULIN,ORTHORHOMBIC CRYSTAL FORM MODEL
- PDB DOI: https://doi.org/10.2210/pdb1HWM/pdb
- Classification: HYDROLASE
- Organism(s): Sambucus ebulus
- Mutation(s): No 
- Deposited: 2001-01-09 Released: 2001-01-24 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.285 
- R-Value Work: 0.194 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
EBULIN | 254 | Sambucus ebulus | Mutation(s): 0  EC: 3.2.2.22 | ||
UniProt | |||||
Find proteins for Q9AVR2 (Sambucus ebulus) Explore Q9AVR2  Go to UniProtKB:  Q9AVR2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9AVR2 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
EBULIN | 266 | Sambucus ebulus | Mutation(s): 0  EC: 3.2.2.22 | ||
UniProt | |||||
Find proteins for Q9AVR2 (Sambucus ebulus) Explore Q9AVR2  Go to UniProtKB:  Q9AVR2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9AVR2 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G51945PF GlyCosmos:  G51945PF GlyGen:  G51945PF |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GAL Query on GAL | D [auth B] | beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.285 
- R-Value Work: 0.194 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.33 | α = 90 |
b = 97.69 | β = 90 |
c = 113.96 | γ = 90 |
Software Name | Purpose |
---|---|
SCALEPACK | data scaling |
X-PLOR | model building |
X-PLOR | refinement |
X-PLOR | phasing |
Entry History 
Deposition Data
- Released Date: 2001-01-24  Deposition Author(s): Pascal, J.M., Day, P.J., Monzingo, A.F., Ernst, S.R., Robertus, J.D.
Revision History (Full details and data files)
- Version 1.0: 2001-01-24
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-08-09
Changes: Data collection, Database references, Refinement description, Structure summary