1HS7 | pdb_00001hs7

VAM3P N-TERMINAL DOMAIN SOLUTION STRUCTURE


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest NOE energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1HS7

This is version 1.4 of the entry. See complete history

Literature

Vam3p structure reveals conserved and divergent properties of syntaxins.

Dulubova, I.Yamaguchi, T.Wang, Y.Sudhof, T.C.Rizo, J.

(2001) Nat Struct Biol 8: 258-264

  • DOI: https://doi.org/10.1038/85012
  • Primary Citation Related Structures: 
    1HS7

  • PubMed Abstract: 

    Syntaxins and Sec1/munc18 proteins are central to intracellular membrane fusion. All syntaxins comprise a variable N-terminal region, a conserved SNARE motif that is critical for SNARE complex formation, and a transmembrane region. The N-terminal region of neuronal syntaxin 1A contains a three-helix domain that folds back onto the SNARE motif forming a 'closed' conformation; this conformation is required for munc18-1 binding. We have examined the generality of the structural properties of syntaxins by NMR analysis of Vam3p, a yeast syntaxin essential for vacuolar fusion. Surprisingly, Vam3p also has an N-terminal three-helical domain despite lacking apparent sequence homology with syntaxin 1A in this region. However, Vam3p does not form a closed conformation and its N-terminal domain is not required for binding to the Sec1/munc18 protein Vps33p, suggesting that critical distinctions exist in the mechanisms used by syntaxins to govern different types of membrane fusion.


  • Organizational Affiliation
    • Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, Texas 75390, USA.

Macromolecule Content 

  • Total Structure Weight: 11.35 kDa 
  • Atom Count: 796 
  • Modeled Residue Count: 97 
  • Deposited Residue Count: 97 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SYNTAXIN VAM397Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q12241 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12241 
Go to UniProtKB:  Q12241
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12241
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest NOE energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-03-07
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection