1HNI

STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN A COMPLEX WITH THE NONNUCLEOSIDE INHIBITOR ALPHA-APA R 95845 AT 2.8 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Work: 0.255 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure of HIV-1 reverse transcriptase in a complex with the non-nucleoside inhibitor alpha-APA R 95845 at 2.8 A resolution.

Ding, J.Das, K.Tantillo, C.Zhang, W.Clark Jr., A.D.Jessen, S.Lu, X.Hsiou, Y.Jacobo-Molina, A.Andries, K.Pauwels, R.Moereels, H.Koymans, L.Janssen, P.A.J.Smith Jr., R.H.Koepke, M.K.Michejda, C.J.Hughes, S.H.Arnold, E.

(1995) Structure 3: 365-379

  • Also Cited By: 1SUQ, 1SV5

  • PubMed Abstract: 
  • HIV-1 reverse transcriptase (RT) is a multifunctional enzyme that copies the RNA genome of HIV-1 into DNA. It is a heterodimer composed of a 66 kDa (p66) and a 51 kDa (p51) subunit. HIV-1 RT is a crucial target for structure-based drug design, and po ...

    HIV-1 reverse transcriptase (RT) is a multifunctional enzyme that copies the RNA genome of HIV-1 into DNA. It is a heterodimer composed of a 66 kDa (p66) and a 51 kDa (p51) subunit. HIV-1 RT is a crucial target for structure-based drug design, and potent inhibitors have been identified, whose efficacy, however, is limited by drug resistance.


    Related Citations: 
    • Crystals of a Ternary Complex of Human Immunodeficiency Virus Type 1 Reverse Transcriptase with a Monoclonal Antibody Fab Fragment and Double-Stranded DNA Diffract X-Rays to 3.5 Angstroms Resolution
      Jacobo-Molina, A.,Clark Junior, A.D.,Williams, R.L.,Nanni, R.G.,Clark, P.,Ferris, A.L.,Hughes, S.H.,Arnold, E.
      (1991) Proc.Natl.Acad.Sci.USA 88: 10895
    • HIV-1 Reverse Transcriptase Purified from a Recombinant Strain of Escherichia Coli
      Clark, P.K.,Ferris, A.L.,Miller, D.A.,Hizi, A.,Kim, K.W.,Deringer-Boyer, S.M.,Mellini, M.L.,Clark Junior, A.D.,Arnold, G.F.,Lebherz III, W.B.
      (1990) Aids Res.Hum.Retroviruses 6: 753
    • Structure of HIV-1 Reverse Transcriptase(Slash)DNA Complex at 7 Angstroms Resolution Showing Active Site Locations
      Arnold, E.,Jacobo-Molina, A.,Nanni, R.G.,Williams, R.L.,Lu, X.,Ding, J.,Clark Junior, A.D.,Zhang, A.,Ferris, A.L.,Clark, P.,Hizi, A.,Hughes, S.H.
      (1992) Nature 357: 85
    • Expression of Soluble, Enzymatically Active, Human Immunodeficiency Virus Reverse Transcriptase in Escherichia Coli and Analysis of Mutants
      Hizi, A.,Mcgill, C.,Hughes, S.H.
      (1988) Proc.Natl.Acad.Sci.USA 85: 1218
    • Locations of Anti-Aids Drug Binding Sites and Resistance Mutations in the Three-Dimensional Structure of HIV-1 Reverse Transcriptase: Implications for Mechanisms of Drug Inhibition and Resistance
      Tantillo, C.,Ding, J.,Jacobo-Molina, A.,Nanni, R.G.,Boyer, P.L.,Hughes, S.H.,Pauwels, R.,Andries, K.,Janssen, P.A.J.,Arnold, E.
      (1994) J.Mol.Biol. 243: 369
    • The Effects of Cysteine Mutations on the Reverse Transcriptases of Human Immunodeficiency Virus Types 1 and 2
      Hizi, A.,Shaharabany, M.,Tal, R.,Hughes, S.H.
      (1992) J.Biol.Chem. 267: 1293
    • Buried Surface Analysis of HIV-1 Reverse Transcriptase P66(Slash)P51 Heterodimer and its Interaction with DsDNA Template(Slash)Primer
      Ding, J.,Jacobo-Molina, A.,Tantillo, C.,Lu, X.,Nanni, R.G.,Arnold, E.
      (1994) J.Mol.Recog. 7: 157
    • Crystal Structure of Human Immunodeficiency Virus Type 1 Reverse Transcriptase Complexed with Double-Stranded DNA at 3.0 Angstroms Resolution Shows Bent DNA
      Jacobo-Molina, A.,Ding, J.,Nanni, R.G.,Clark Junior, A.D.,Lu, X.,Tantillo, C.,Williams, R.L.,Kamer, G.,Ferris, A.L.,Clark, P.,Hizi, A.,Hughes, S.H.,Arnold, E.
      (1993) Proc.Natl.Acad.Sci.USA 90: 6320
    • Review of HIV-1 Reverse Transcriptase Three-Dimensional Structure: Implications for Drug Design
      Nanni, R.G.,Ding, J.,Jacobo-Molina, A.,Hughes, S.H.,Arnold, E.
      (1993) Perspect.Drug Discovery Des. 1: 129


    Organizational Affiliation

    Center for Advanced Biotechnology and Medicine (CABM), Piscataway, NJ 08854-5638, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66)
A
558Human immunodeficiency virus type 1 group M subtype BGene Names: gag-pol
EC: 3.4.23.16, 3.1.-.-, 2.7.7.49, 2.7.7.7, 3.1.26.13, 2.7.7.-, 3.1.13.2
Find proteins for P03366 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P03366
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51)
B
427Human immunodeficiency virus type 1 group M subtype BGene Names: gag-pol
EC: 3.4.23.16, 3.1.-.-, 2.7.7.49, 2.7.7.7, 3.1.26.13, 2.7.7.-, 3.1.13.2
Find proteins for P03367 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P03367
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AAA
Query on AAA

Download SDF File 
Download CCD File 
A
(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDE
C17 H16 Br2 N2 O2
FELUFXCUIYHAPB-INIZCTEOSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Work: 0.255 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 223.300α = 90.00
b = 69.900β = 105.40
c = 106.500γ = 90.00
Software Package:
Software NamePurpose
X-PLORrefinement
X-PLORmodel building
X-PLORphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1995-06-03
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2012-02-22
    Type: Database references