1HNI

STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN A COMPLEX WITH THE NONNUCLEOSIDE INHIBITOR ALPHA-APA R 95845 AT 2.8 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Work: 0.255 
  • R-Value Observed: 0.255 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of HIV-1 reverse transcriptase in a complex with the non-nucleoside inhibitor alpha-APA R 95845 at 2.8 A resolution.

Ding, J.Das, K.Tantillo, C.Zhang, W.Clark Jr., A.D.Jessen, S.Lu, X.Hsiou, Y.Jacobo-Molina, A.Andries, K.Pauwels, R.Moereels, H.Koymans, L.Janssen, P.A.J.Smith Jr., R.H.Koepke, M.K.Michejda, C.J.Hughes, S.H.Arnold, E.

(1995) Structure 3: 365-379

  • DOI: 10.1016/s0969-2126(01)00168-x
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • HIV-1 reverse transcriptase (RT) is a multifunctional enzyme that copies the RNA genome of HIV-1 into DNA. It is a heterodimer composed of a 66 kDa (p66) and a 51 kDa (p51) subunit. HIV-1 RT is a crucial target for structure-based drug design, and po ...

    HIV-1 reverse transcriptase (RT) is a multifunctional enzyme that copies the RNA genome of HIV-1 into DNA. It is a heterodimer composed of a 66 kDa (p66) and a 51 kDa (p51) subunit. HIV-1 RT is a crucial target for structure-based drug design, and potent inhibitors have been identified, whose efficacy, however, is limited by drug resistance.


    Related Citations: 
    • Buried Surface Analysis of HIV-1 Reverse Transcriptase P66(Slash)P51 Heterodimer and its Interaction with DsDNA Template(Slash)Primer
      Ding, J., Jacobo-Molina, A., Tantillo, C., Lu, X., Nanni, R.G., Arnold, E.
      (1994) J Mol Recognit 7: 157
    • Locations of Anti-Aids Drug Binding Sites and Resistance Mutations in the Three-Dimensional Structure of HIV-1 Reverse Transcriptase: Implications for Mechanisms of Drug Inhibition and Resistance
      Tantillo, C., Ding, J., Jacobo-Molina, A., Nanni, R.G., Boyer, P.L., Hughes, S.H., Pauwels, R., Andries, K., Janssen, P.A.J., Arnold, E.
      (1994) J Mol Biol 243: 369
    • Crystal Structure of Human Immunodeficiency Virus Type 1 Reverse Transcriptase Complexed with Double-Stranded DNA at 3.0 Angstroms Resolution Shows Bent DNA
      Jacobo-Molina, A., Ding, J., Nanni, R.G., Clark Junior, A.D., Lu, X., Tantillo, C., Williams, R.L., Kamer, G., Ferris, A.L., Clark, P., Hizi, A., Hughes, S.H., Arnold, E.
      (1993) Proc Natl Acad Sci U S A 90: 6320
    • Review of HIV-1 Reverse Transcriptase Three-Dimensional Structure: Implications for Drug Design
      Nanni, R.G., Ding, J., Jacobo-Molina, A., Hughes, S.H., Arnold, E.
      (1993) Perspect Drug Discov Des 1: 129
    • Structure of HIV-1 Reverse Transcriptase(Slash)DNA Complex at 7 Angstroms Resolution Showing Active Site Locations
      Arnold, E., Jacobo-Molina, A., Nanni, R.G., Williams, R.L., Lu, X., Ding, J., Clark Junior, A.D., Zhang, A., Ferris, A.L., Clark, P., Hizi, A., Hughes, S.H.
      (1992) Nature 357: 85
    • The Effects of Cysteine Mutations on the Reverse Transcriptases of Human Immunodeficiency Virus Types 1 and 2
      Hizi, A., Shaharabany, M., Tal, R., Hughes, S.H.
      (1992) J Biol Chem 267: 1293
    • Crystals of a Ternary Complex of Human Immunodeficiency Virus Type 1 Reverse Transcriptase with a Monoclonal Antibody Fab Fragment and Double-Stranded DNA Diffract X-Rays to 3.5 Angstroms Resolution
      Jacobo-Molina, A., Clark Junior, A.D., Williams, R.L., Nanni, R.G., Clark, P., Ferris, A.L., Hughes, S.H., Arnold, E.
      (1991) Proc Natl Acad Sci U S A 88: 10895
    • HIV-1 Reverse Transcriptase Purified from a Recombinant Strain of Escherichia Coli
      Clark, P.K., Ferris, A.L., Miller, D.A., Hizi, A., Kim, K.W., Deringer-Boyer, S.M., Mellini, M.L., Clark Junior, A.D., Arnold, G.F., Lebherz III, W.B.
      (1990) AIDS Res Hum Retroviruses 6: 753
    • Expression of Soluble, Enzymatically Active, Human Immunodeficiency Virus Reverse Transcriptase in Escherichia Coli and Analysis of Mutants
      Hizi, A., Mcgill, C., Hughes, S.H.
      (1988) Proc Natl Acad Sci U S A 85: 1218

    Organizational Affiliation

    Center for Advanced Biotechnology and Medicine (CABM), Piscataway, NJ 08854-5638, USA.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66)
A
558Human immunodeficiency virus 1Mutation(s): 0 
EC: 2.7.7.49 (PDB Primary Data), 3.4.23.16 (UniProt), 2.7.7.7 (UniProt), 3.1.26.13 (UniProt), 3.1.13.2 (UniProt), 2.7.7 (UniProt), 3.1 (UniProt)
Find proteins for P03366 (Human immunodeficiency virus type 1 group M subtype B (isolate BH10))
Go to UniProtKB:  P03366
Protein Feature View
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51)
B
427Human immunodeficiency virus 1Mutation(s): 0 
EC: 2.7.7.49 (PDB Primary Data), 3.4.23.16 (UniProt), 2.7.7.7 (UniProt), 3.1.26.13 (UniProt), 3.1.13.2 (UniProt), 2.7.7 (UniProt), 3.1 (UniProt)
Find proteins for P03367 (Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI))
Go to UniProtKB:  P03367
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AAA
Query on AAA

Download CCD File 
A
(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDE
C17 H16 Br2 N2 O2
FELUFXCUIYHAPB-INIZCTEOSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Work: 0.255 
  • R-Value Observed: 0.255 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 223.3α = 90
b = 69.9β = 105.4
c = 106.5γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1995-06-03
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2012-02-22
    Changes: Database references