1HKD

Structure of pea lectin in complex with alpha-methyl-D-glucopyranoside


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure of Pea Lectin in Complex with Alpha-Methyl-D-Glucopyranoside

Shevtsov, M.B.Tsygannik, I.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PEA LECTIN ALPHA CHAIN
A, C
181Pisum sativumGene Names: LECA (PSL1)
Find proteins for P02867 (Pisum sativum)
Go to UniProtKB:  P02867
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PEA LECTIN BETA CHAIN
B, D
52Pisum sativumGene Names: LECA (PSL1)
Find proteins for P02867 (Pisum sativum)
Go to UniProtKB:  P02867
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A, C
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
GYP
Query on GYP

Download SDF File 
Download CCD File 
A, C
METHYL-ALPHA-D-GLUCOPYRANOSIDE
ALPHA-METHYL-D-GLUCOPYRANOSIDE
C7 H14 O6
HOVAGTYPODGVJG-ZFYZTMLRSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A, C
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.163 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.793α = 90.00
b = 61.235β = 90.00
c = 136.005γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-03-18
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-06-28
    Type: Data collection