1HB5

quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions.

Martin, C.S.Burnett, R.M.De Haas, F.Heinkel, R.Rutten, T.Fuller, S.D.Butcher, S.J.Bamford, D.H.

(2001) Structure 9: 917

  • Primary Citation of Related Structures:  1HB7, 1HB9
  • Also Cited By: 1GW7, 1GW8

  • PubMed Abstract: 
  • The dsDNA bacteriophage PRD1 has a membrane inside its icosahedral capsid. While its large size (66 MDa) hinders the study of the complete virion at atomic resolution, a 1.65-A crystallographic structure of its major coat protein, P3, is available. C ...

    The dsDNA bacteriophage PRD1 has a membrane inside its icosahedral capsid. While its large size (66 MDa) hinders the study of the complete virion at atomic resolution, a 1.65-A crystallographic structure of its major coat protein, P3, is available. Cryo-electron microscopy (cryo-EM) and three-dimensional reconstruction have shown the capsid at 20-28 A resolution. Striking architectural similarities between PRD1 and the mammalian adenovirus indicate a common ancestor.


    Related Citations: 
    • Viral Evolution Revealed by Bacteriophage Prd1 and Human Adenovirus Coat Protein Structures.
      Benson, S.D.,Bamford, J.K.,Bamford, D.H.,Burnett, R.M.
      (1999) Cell 98: 825
    • The X-Ray Crystal Structure of P3, the Major Coat Protein of the Lipid-Containing Bacteriophage Prd1, at 1.65 A Resolution.
      Benson, S.D.,Bamford, J.K.H.,Bamford, D.H.,Burnett, R.M.
      (2002) Acta Crystallogr.,Sect.D 58: 39


    Organizational Affiliation

    The Wistar Institute, 3601 Spruce Street, Philadelphia, PA 19104, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BACTERIOPHAGE PRD1 P3-SHELL
A, B, C, D, E, F, G, H, I
394Enterobacteria phage PRD1Gene Names: III
Find proteins for P22535 (Enterobacteria phage PRD1)
Go to UniProtKB:  P22535
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2001-12-05
    Type: Initial release
  • Version 1.1: 2012-04-18
    Type: Database references, Other, Version format compliance
  • Version 1.2: 2017-04-19
    Type: Other
  • Version 1.3: 2017-08-30
    Type: Data collection, Refinement description