1H8T

Echovirus 11


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.246 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Determination of the Structure of a Decay Accelerating Factor-Binding Clinical Isolate of Echovirus 11 Allows Mapping of Mutants with Altered Receptor Requirements for Infection

Stuart, A.Mckee, T.Williams, P.A.Harley, C.Shen, S.Stuart, D.I.Brown, T.D.K.Lea, S.M.

(2002) J.Virol. 76: 7694

  • DOI: 10.1128/jvi.76.15.7694-7704.2002

  • PubMed Abstract: 
  • We have used X-ray crystallography to determine the structure of a decay accelerating factor (DAF)-binding, clinic-derived isolate of echovirus 11 (EV11-207). The structures of the capsid proteins closely resemble those of capsid proteins of other pi ...

    We have used X-ray crystallography to determine the structure of a decay accelerating factor (DAF)-binding, clinic-derived isolate of echovirus 11 (EV11-207). The structures of the capsid proteins closely resemble those of capsid proteins of other picornaviruses. The structure allows us to interpret a series of amino acid changes produced by passaging EV11-207 in different cell lines as highlighting the locations of multiple receptor-binding sites on the virion surface. We suggest that a DAF-binding site is located at the fivefold axes of the virion, while the binding site for a distinct but as yet unidentified receptor is located within the canyon surrounding the virion fivefold axes.


    Organizational Affiliation

    Division of Virology, Department of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ECHOVIRUS 11 COAT PROTEIN VP1
A
292Echovirus E11Mutation(s): 0 
Find proteins for Q8JKE8 (Echovirus E11)
Go to UniProtKB:  Q8JKE8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ECHOVIRUS 11 COAT PROTEIN VP2
B
262Echovirus E11Mutation(s): 0 
Find proteins for Q8JKE8 (Echovirus E11)
Go to UniProtKB:  Q8JKE8
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ECHOVIRUS 11 COAT PROTEIN VP3
C
238Echovirus E11Mutation(s): 0 
Find proteins for Q8JKE8 (Echovirus E11)
Go to UniProtKB:  Q8JKE8
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ECHOVIRUS 11 COAT PROTEIN VP4
D
68Echovirus E11Mutation(s): 0 
Find proteins for Q8JKE8 (Echovirus E11)
Go to UniProtKB:  Q8JKE8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR

Download SDF File 
Download CCD File 
D
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
DOA
Query on DOA

Download SDF File 
Download CCD File 
A
12-AMINO-DODECANOIC ACID
C12 H25 N O2
PBLZLIFKVPJDCO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.246 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 300.850α = 90.00
b = 300.850β = 90.00
c = 1476.620γ = 120.00
Software Package:
Software NamePurpose
X-PLORphasing
SCALEPACKdata scaling
CNSrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2002-07-11
    Type: Initial release
  • Version 1.1: 2012-01-11
    Type: Derived calculations, Other, Refinement description, Version format compliance