1H8E

(ADP.AlF4)2(ADP.SO4) bovine F1-ATPase (all three catalytic sites occupied)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of Bovine Mitochondrial F1-ATPase with Nucleotide Bound to All Three Catalytic Sites: Implications for the Mechanism of Rotary Catalysis

Menz, R.I.Walker, J.E.Leslie, A.G.W.

(2001) Cell 106: 331

  • Also Cited By: 1W0J, 1W0K, 2CK3

  • PubMed Abstract: 
  • The crystal structure of a novel aluminium fluoride inhibited form of bovine mitochondrial F(1)-ATPase has been determined at 2 A resolution. In contrast to all previously determined structures of the bovine enzyme, all three catalytic sites are occu ...

    The crystal structure of a novel aluminium fluoride inhibited form of bovine mitochondrial F(1)-ATPase has been determined at 2 A resolution. In contrast to all previously determined structures of the bovine enzyme, all three catalytic sites are occupied by nucleotide. The subunit that did not bind nucleotide in previous structures binds ADP and sulfate (mimicking phosphate), and adopts a "half-closed" conformation. This structure probably represents the posthydrolysis, pre-product release step on the catalytic pathway. A catalytic scheme for hydrolysis (and synthesis) at physiological rates and a mechanism for the ATP-driven rotation of the gamma subunit are proposed based on the crystal structures of the bovine enzyme.


    Related Citations: 
    • Molecular Architecture of the Rotary Motor in ATP Synthase
      Stock, D.,Leslie, A.G.W.,Walker, J.E.
      (1999) Science 286: 1700
    • Structure at 2.8 A Resolution of F1-ATPase from Bovine Heart Mitochondria
      Abrahams, J.P.,Leslie, A.G.W.,Lutter, R.,Walker, J.E.
      (1994) Nature 370: 621
    • Crystallization of F1-ATPase from Bovine Heart Mitochondria
      Lutter, R.,Abrahams, J.P.,Van Raaij, M.J.,Todd, R.J.,Lundqvist, T.,Buchanan, S.K.,Leslie, A.G.,Walker, J.E.
      (1993) J.Mol.Biol. 229: 787
    • ATP Synthesis by Rotary Catalysis (Nobel Lecture)
      Walker, J.E.
      (1998) Angew.Chem.Int.Ed.Engl. 37: 2309
    • The Structure of the Central Stalk in Bovine F1-ATPase at 2.4A Resolution
      Gibbons, C.,Montgomery, M.G.,Leslie, A.G.W.,Walker, J.E.
      (2000) Nat.Struct.Mol.Biol. 7: 1055


    Organizational Affiliation

    Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BOVINE MITOCHONDRIAL F1-ATPASE
A, B, C
510Bos taurusGene Names: ATP5A1 (ATP5A2)
Find proteins for P19483 (Bos taurus)
Go to Gene View: ATP5A1
Go to UniProtKB:  P19483
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
BOVINE MITOCHONDRIAL F1-ATPASE
D, E, F
482Bos taurusGene Names: ATP5B
EC: 3.6.3.14
Find proteins for P00829 (Bos taurus)
Go to Gene View: ATP5B
Go to UniProtKB:  P00829
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
BOVINE MITOCHONDRIAL F1-ATPASE
G
272Bos taurusGene Names: ATP5C1 (ATP5C)
Find proteins for P05631 (Bos taurus)
Go to Gene View: ATP5C1
Go to UniProtKB:  P05631
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
BOVINE MITOCHONDRIAL F1-ATPASE
H
146Bos taurusGene Names: ATP5D
Find proteins for P05630 (Bos taurus)
Go to Gene View: ATP5D
Go to UniProtKB:  P05630
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
BOVINE MITOCHONDRIAL F1-ATPASE
I
50Bos taurusGene Names: ATP5E
Find proteins for P05632 (Bos taurus)
Go to Gene View: ATP5E
Go to UniProtKB:  P05632
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
E
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
A, B, C, D, E, F
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ALF
Query on ALF

Download SDF File 
Download CCD File 
D, F
TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, E, F
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.201 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 267.700α = 90.00
b = 106.200β = 90.00
c = 138.300γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
CCP4data scaling
REFMACrefinement
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2001-08-10
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance