1GUX

RB POCKET BOUND TO E7 LXCXE MOTIF

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.218 

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This is version 1.2 of the entry. See complete history. 


Literature

Structure of the retinoblastoma tumour-suppressor pocket domain bound to a peptide from HPV E7.

Lee, J.O., Russo, A.A., Pavletich, N.P.

(1998) Nature 391: 859-865

  • DOI: 10.1038/36038
  • Primary Citation of Related Structures:  
    1GUX

  • PubMed Abstract: 

    • The pocket domain of the retinoblastoma (Rb) tumour suppressor is central to Rb function, and is frequently inactivated by the binding of the human papilloma virus E7 oncoprotein in cervical cancer. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box ...

    The pocket domain of the retinoblastoma (Rb) tumour suppressor is central to Rb function, and is frequently inactivated by the binding of the human papilloma virus E7 oncoprotein in cervical cancer. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB.

    Organizational Affiliation: 

    Howard Hughes Medical Institute, Memorial Sloan-Kettering Cancer Center, New York, New York 10021, USA.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
RETINOBLASTOMA PROTEINA218Homo sapiensMutation(s): 0 
Gene Names: RB1
Find proteins for P06400 (Homo sapiens)
Explore P06400 
Go to UniProtKB:  P06400
NIH Common Fund Data Resources
PHAROS:  P06400
GTEx:  ENSG00000139687
Protein Feature View
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
RETINOBLASTOMA PROTEINB152Homo sapiensMutation(s): 0 
Gene Names: RB1
Find proteins for P06400 (Homo sapiens)
Explore P06400 
Go to UniProtKB:  P06400
NIH Common Fund Data Resources
PHAROS:  P06400
GTEx:  ENSG00000139687
Protein Feature View
Expand
  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
ONCOPROTEINC [auth E]9Human papillomavirusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.218 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.5α = 90
b = 76.8β = 90.9
c = 64γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-12-02
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance