Macromolecule Content

• Total Structure Weight: 3711.06 
• Atom Count: 258 
• Residue Count: 35 
• Unique protein chains: 1

1FWO

THE SOLUTION STRUCTURE OF A 35-RESIDUE FRAGMENT FROM THE GRANULIN/EPITHELIN-LIKE SUBDOMAIN OF RICE ORYZAIN BETA (ROB 382-416 (C398S,C399S,C407S,C413S))

• DOI: 10.2210/pdb1FWO/pdb
• BMRB: 4645

• Classification: HYDROLASE
• Organism(s): Oryza sativa subsp. japonica
• Mutation(s): 4 


• Deposited: 2000-09-24 Released: 2001-05-09 
• Deposition Author(s): Tolkatchev, D., Xu, P., Ni, F.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: structures with the least restraint violations 

Literature

A peptide derived from the C-terminal part of a plant cysteine protease folds into a stack of two beta-hairpins, a scaffold present in the emerging family of granulin-like growth factors.

Tolkatchev, D., Xu, P., Ni, F.

(2001) J.Pept.Res. 57: 227-233

• PubMed: 11298924 


• PubMed Abstract: 
  

A 35 amino acid residue peptide corresponding to the N-terminal subdomain of the granulin-like repeat from rice oryzain beta was synthesized and regioselectively oxidized to produce a species with a [1-3, 2-4] disulfide-pairing pattern. The resulting peptide was studied in solution using NMR and was shown to adopt the tertiary topology of a stack of two beta-hairpins found in the emerging family of granulin-like growth factors. Because of the longer second beta-hairpin, the overall conformation of the peptide is somewhat more flexible than that of its well-structured carp granulin-1 analog. Except for the cysteine alignment, there is very little sequence homology between granulin-like growth factors from the animal kingdom and the granulin-like repeats at the C-termini of plant cysteine proteases. Therefore, the stack of two beta-hairpins may be a conserved three-dimensional organization of the granulin-like repeats from evolutionary distant sources with a significant role in specific protein-protein interactions.

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Organizational Affiliation: 

Montreal Joint Centre for Structural Biology, Biotechnology Research Institute, National Research Council of Canada, Québec.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
ORYZAIN BETA CHAIN	A	35	Oryza sativa subsp. japonica	Mutation(s): 4  EC: 3.4.22.-
Find proteins for P25777 (Oryza sativa subsp. japonica) Go to UniProtKB:  P25777

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: structures with the least restraint violations 
• Olderado: 1FWO Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2000-09-24 
• Released Date: 2001-05-09 
• Deposition Author(s): Tolkatchev, D., Xu, P., Ni, F.

Revision History 

• Version 1.0: 2001-05-09
  Type: Initial release
• Version 1.1: 2008-04-27
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance